Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0044
(704 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A) iden... 119 2e-27
At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) simi... 117 7e-27
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi... 116 1e-26
At5g24260.1 68418.m02854 prolyl oligopeptidase family protein si... 28 5.2
At2g01100.3 68415.m00018 expressed protein 28 5.2
At2g01100.2 68415.m00017 expressed protein 28 5.2
At2g01100.1 68415.m00016 expressed protein 28 5.2
At3g56240.1 68416.m06250 copper homeostasis factor / copper chap... 28 6.9
At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera... 28 6.9
At1g48740.1 68414.m05454 expressed protein 28 6.9
At1g32090.1 68414.m03949 early-responsive to dehydration protein... 28 6.9
At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SD... 27 9.2
At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SD... 27 9.2
At3g45200.1 68416.m04878 hypothetical protein 27 9.2
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 27 9.2
At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SD... 27 9.2
At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SD... 27 9.2
>At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A)
identical to GB:Q42351, location of EST 105E2T7,
gb|T22624
Length = 120
Score = 119 bits (287), Expect = 2e-27
Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Frame = -3
Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
MVQRL +R R SY TKSNQ RIV+TPGG+LVYQ KK P+C +++GI RP+
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60
Query: 255 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 130
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104
>At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) similar
to SP:Q42351 from [Arabidopsis thaliana]
Length = 119
Score = 117 bits (282), Expect = 7e-27
Identities = 59/104 (56%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Frame = -3
Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
MVQRL +R R SY TKSNQ RIV+TPGG+L YQ KK P+C +++GI RP
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
Query: 255 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 130
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104
>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
to 60S ribosomal protein L34 GB:P41098 [Nicotiana
tabacum]
Length = 120
Score = 116 bits (280), Expect = 1e-26
Identities = 60/104 (57%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Frame = -3
Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
MVQRL +R R SY TKSNQ RIV+TPGG+L YQ K P+C +++GI RPA
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60
Query: 255 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 130
E RSRL ++TV R YGGVL V++RIVRAFL+EEQKIVK
Sbjct: 61 EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVK 104
>At5g24260.1 68418.m02854 prolyl oligopeptidase family protein
similar to dipeptidyl peptidase IV [Stenotrophomonas
maltophilia] GI:1753197; contains Pfam profiles PF00326:
prolyl oligopeptidase family, PF00930: Dipeptidyl
peptidase IV (DPP IV) N-terminal region
Length = 746
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 449 PESVPPDT*QSPKIPFR*SQNTLLLRYLRPRSHHLLVLI 565
PE + P + SP I R S N L L Y+R H+L L+
Sbjct: 128 PELIVPSSPTSPIIDPRLSPNGLFLAYVRESELHVLNLL 166
>At2g01100.3 68415.m00018 expressed protein
Length = 247
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 672 RSLAPAVHLRHRYRQDEQTEALLIDKGHYKHEWYSDIKT 556
RSL+P+ Y + E + K H +H+W+S KT
Sbjct: 107 RSLSPSDDSTGDYESGSEDELRMKIKHHRRHKWHSSRKT 145
>At2g01100.2 68415.m00017 expressed protein
Length = 247
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 672 RSLAPAVHLRHRYRQDEQTEALLIDKGHYKHEWYSDIKT 556
RSL+P+ Y + E + K H +H+W+S KT
Sbjct: 107 RSLSPSDDSTGDYESGSEDELRMKIKHHRRHKWHSSRKT 145
>At2g01100.1 68415.m00016 expressed protein
Length = 247
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 672 RSLAPAVHLRHRYRQDEQTEALLIDKGHYKHEWYSDIKT 556
RSL+P+ Y + E + K H +H+W+S KT
Sbjct: 107 RSLSPSDDSTGDYESGSEDELRMKIKHHRRHKWHSSRKT 145
>At3g56240.1 68416.m06250 copper homeostasis factor / copper
chaperone (CCH) (ATX1) identical to gi:3168840 Pfam
profile PF00403: Heavy-metal-associated domain
Length = 121
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 382 SKKNSKDTGWPLGLSVCQKAQEDPKVWSVQE 290
SK K + WP+ KA+ DPKV +V E
Sbjct: 58 SKTGKKTSYWPVEAEAEPKAEADPKVETVTE 88
>At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 245 RERSAGLAGWIPRSLLLH*PHLGIFLGFLTY 337
+ERS + GW P+ L+L P +G GFLT+
Sbjct: 347 KERSLLIKGWSPQMLILSHPAVG---GFLTH 374
>At1g48740.1 68414.m05454 expressed protein
Length = 393
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3
Query: 420 TFRRRLSYNTKSNQRRIVRTP-GGRLVYQ 337
+FR+ +S NTK + RRI+ P G LV+Q
Sbjct: 130 SFRKAISENTKESFRRIISEPFPGVLVFQ 158
>At1g32090.1 68414.m03949 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 806
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 456 PSHRIPDNHQRFHSDNHKTHY 518
P H +PD +F NH HY
Sbjct: 212 PGHSVPDTVDQFFKTNHPEHY 232
>At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 279
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 274 DTTEFALALTTPWDLLGLFDILINQAATRCPYYSSL 381
D A+ WD+ G D LIN A R SSL
Sbjct: 83 DAATIQKAVREAWDIFGKIDALINNAGIRGNVKSSL 118
>At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 280
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 274 DTTEFALALTTPWDLLGLFDILINQAATRCPYYSSL 381
D A+ WD+ G D LIN A R SSL
Sbjct: 84 DAATIQKAVREAWDIFGKIDALINNAGIRGNVKSSL 119
>At3g45200.1 68416.m04878 hypothetical protein
Length = 300
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 572 TVILKLISDVIVVLGNEAIMCFVIIGMESLVIVRYPVGRIPAPT 441
++IL L +I L EA+ CF + L + P+GRIP T
Sbjct: 54 SIILTLTDPLIAGLAYEAVSCF-----QCLSLNNPPIGRIPLTT 92
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 229 LTVAKTRTFSRS--SWLDTTEFALALTTPWDLLGLFDILINQAATRCPYY 372
L V + FS+ SWLD A L +D++G+ ++++ T+C +
Sbjct: 5041 LNVKEMIGFSKELISWLDEINSATDLQEAFDIVGVLADVLSEGVTQCDQF 5090
>At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 276
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 274 DTTEFALALTTPWDLLGLFDILINQAATRCPYYSSL 381
D A+ W++ G D+LIN A R SSL
Sbjct: 79 DADTIRKAVKEAWEIFGTIDVLINNAGIRGNVKSSL 114
>At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 277
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 274 DTTEFALALTTPWDLLGLFDILINQAATRCPYYSSL 381
D A+ W++ G D+LIN A R SSL
Sbjct: 80 DADTIRKAVKEAWEIFGTIDVLINNAGIRGNVKSSL 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,757,290
Number of Sequences: 28952
Number of extensions: 298585
Number of successful extensions: 791
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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