Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0036
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.3  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.3  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +3

Query: 105 LYKMVQRTFPP-HHRGTLKW 161
           LYK +++ FPP    G L W
Sbjct: 286 LYKKIKKAFPPLSLHGQLLW 305


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 440 IVRDIALSIAQNAPKAIVAII 502
           ++ D+ALS  QN P  I+  I
Sbjct: 197 VISDLALSKCQNTPIGILGRI 217


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 440 IVRDIALSIAQNAPKAIVAII 502
           ++ D+ALS  QN P  I+  I
Sbjct: 197 VISDLALSKCQNTPIGILGRI 217


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +1

Query: 568 PEPRARRHHSGRS----PRCHLRRRDQWRGPDLR 657
           P PR++R ++GR+    P C    R    G  LR
Sbjct: 277 PSPRSQRRYTGRATCDCPNCQEAERLGPAGVHLR 310


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 420 RSSRVIPGLRGTPAGMTTTSASLM 349
           RS+  IPG   TP   T  S  +M
Sbjct: 85  RSAGSIPGASSTPENKTFPSIQVM 108


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 262 DPRRRSRPFPHEHPSQGQRPQGT*GAISSHQR 357
           D   R+   PH  PS    P GT G +   Q+
Sbjct: 398 DQSNRAVFSPHAGPSGAYSPDGTMGYMMDGQQ 429


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,681
Number of Sequences: 336
Number of extensions: 3774
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)