Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0036
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.2  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 299 CSCGKGRLRRRGSQALCRIKPA 234
           C+C  GR+RRR   A  R KP+
Sbjct: 406 CACCPGRVRRRYQPAF-RCKPS 426


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -2

Query: 387 TPAGMTTTSASLMAADSSSGPLWPLTLAGVFMWERSAA--TPGVT 259
           TPA +TTT A+     +S+    P T + V     + A  T G T
Sbjct: 215 TPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTT 259


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = +1

Query: 211 EAESSGDQAGFIRHSACDPRRRSRPFPHE 297
           E    G   G+     CD R++  P P +
Sbjct: 154 ELSQPGSLNGYGSSDGCDARKKKGPTPRQ 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,782
Number of Sequences: 438
Number of extensions: 4830
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)