Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0034
         (343 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   2.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   2.6  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   2.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   4.6  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   4.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   4.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    20   6.1  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    20   6.1  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    20   8.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   8.1  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 333 QCSIXVIPACXXPASLALSTGVAQLQTRRI 244
           +C I   P C  P S AL+T     +T R+
Sbjct: 474 KCDIKGQPYCSLPNSCALTTRELPGETLRL 503


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 333 QCSIXVIPACXXPASLALSTGVAQLQTRRI 244
           +C I   P C  P S AL+T     +T R+
Sbjct: 481 KCDIKGQPYCSLPNSCALTTRELPGETLRL 510


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 34  RSAMLLPASQRRLRALGSAAWGLPIIQHLPI 126
           R  M    S +R R L  AAW    +  LPI
Sbjct: 127 RHPMKFSGSWKRARYLILAAWFFSALYSLPI 157


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 85  SAAWGLPIIQHLPIASRAYSTTSNC 159
           +AA+ LPII +L       +T +NC
Sbjct: 209 TAAFMLPIIHNLLSDKNPPNTENNC 233


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 48  TSSLTKEVASAWECRVGPPDHPASADRIQSLF 143
           +S+ T +++S W   +G    P   + + SLF
Sbjct: 30  SSACTDDLSSCWSEDMGSFSLPLDLEPLPSLF 61


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
          protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 13 VGPPSPPRSAMLLPASQRRLRALGSAAWG 99
          +GPP+P  S    P S+     L    +G
Sbjct: 7  IGPPTPHESNTSTPVSKSAFIELQQHGYG 35


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 100 LPIIQHLPIASRAYSTTSNCIPLRHRYSRC 189
           L +   L + +    TTS+ +PL   Y  C
Sbjct: 251 LSLTVFLNLVAEKIPTTSDAVPLIGTYFNC 280


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 100 LPIIQHLPIASRAYSTTSNCIPLRHRYSRC 189
           L +   L + +    TTS+ +PL   Y  C
Sbjct: 251 LSLTVFLNLVAEKIPTTSDAVPLIGTYFNC 280


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 232 RVSDLRRAHCRAHTSISNTCVLVGYNSMSLNRLW 131
           RVS L+       +S    C L+G +++S    W
Sbjct: 162 RVSLLQLIKSLRQSSSLEHCTLIGEDNISAKNPW 195


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 19  PPSPPRSAMLLPASQRRL 72
           PPSPP  + L     R+L
Sbjct: 71  PPSPPAPSELPALKSRKL 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,542
Number of Sequences: 336
Number of extensions: 1504
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6664455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)