Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0034
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical ...    28   1.5  
Z81536-9|CAB04362.1|  733|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical pr...    27   2.7  
L15188-2|AAA27947.2|  648|Caenorhabditis elegans Polo kinase pro...    27   2.7  
L15188-1|AAM22025.1|  649|Caenorhabditis elegans Polo kinase pro...    27   2.7  
AF080581-1|AAC34661.1|  648|Caenorhabditis elegans polo-like kin...    27   2.7  
AF057165-1|AAC14129.1|  649|Caenorhabditis elegans putative seri...    27   2.7  
AF040643-13|AAB94958.1|  178|Caenorhabditis elegans Hypothetical...    27   4.7  
Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical pr...    26   6.1  
Z81049-1|CAB61001.2|  503|Caenorhabditis elegans Hypothetical pr...    26   6.1  
L29052-1|AAA27982.2|  503|Caenorhabditis elegans cell death prot...    26   6.1  
AF210702-1|AAG42045.1|  503|Caenorhabditis elegans caspase CED-3...    26   6.1  
AF077536-10|AAK31408.2|  229|Caenorhabditis elegans Hypothetical...    26   6.1  
Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical p...    26   8.1  
AC025715-3|AAU87815.1|  534|Caenorhabditis elegans Hypothetical ...    26   8.1  

>AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical
           protein Y52B11A.4 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 194 YQHLEYLCLSGIQFDVVE*ALDAIGRCWMIGRPHAAL 84
           Y++   +C+ G++ D+V    D    CW+    HA L
Sbjct: 273 YENTVSICIGGVECDLVFFESDMSDPCWLTNEIHAFL 309


>Z81536-9|CAB04362.1|  733|Caenorhabditis elegans Hypothetical
           protein F40D4.12 protein.
          Length = 733

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 238 NVRVSDLRRAHCRAHTSISNTCVLVGYNSMSLN 140
           N+ + DLR A  +   S  N CV+V YNS   N
Sbjct: 195 NISIDDLR-AIKKTAISFENECVVVLYNSQGFN 226


>Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical
           protein C39E9.8b protein.
          Length = 246

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 307 LLXTCLACLEHRRSSAANTQNSPNVRVSDLR 215
           +L   L C E+R  +  N Q+ P ++ +D+R
Sbjct: 97  ILEDFLTCFENRVEACVNDQHGPQIQKTDIR 127


>Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical
           protein C39E9.8a protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 307 LLXTCLACLEHRRSSAANTQNSPNVRVSDLR 215
           +L   L C E+R  +  N Q+ P ++ +D+R
Sbjct: 97  ILEDFLTCFENRVEACVNDQHGPQIQKTDIR 127


>L15188-2|AAA27947.2|  648|Caenorhabditis elegans Polo kinase
           protein 1, isoform a protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 132 GCDRQMLDDREAPRGTPKRSQPPL*G 55
           G +  M+++  APRG   RSQ PL G
Sbjct: 311 GHETSMMEENVAPRGVDARSQRPLNG 336


>L15188-1|AAM22025.1|  649|Caenorhabditis elegans Polo kinase
           protein 1, isoform b protein.
          Length = 649

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 132 GCDRQMLDDREAPRGTPKRSQPPL*G 55
           G +  M+++  APRG   RSQ PL G
Sbjct: 312 GHETSMMEENVAPRGVDARSQRPLNG 337


>AF080581-1|AAC34661.1|  648|Caenorhabditis elegans polo-like
           kinase-1 protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 132 GCDRQMLDDREAPRGTPKRSQPPL*G 55
           G +  M+++  APRG   RSQ PL G
Sbjct: 311 GHETSMMEENVAPRGVDARSQRPLNG 336


>AF057165-1|AAC14129.1|  649|Caenorhabditis elegans putative
           serine/threonine proteinkinase protein.
          Length = 649

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 132 GCDRQMLDDREAPRGTPKRSQPPL*G 55
           G +  M+++  APRG   RSQ PL G
Sbjct: 312 GHETSMMEENVAPRGVDARSQRPLNG 337


>AF040643-13|AAB94958.1|  178|Caenorhabditis elegans Hypothetical
          protein F14D2.2 protein.
          Length = 178

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 1  RQRSVGPPSPPRSAMLLPASQRRL 72
          +Q  V PP PPR+   LP +  R+
Sbjct: 5  KQEQVNPPPPPRAITPLPPATHRI 28


>Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical
           protein ZK1053.4 protein.
          Length = 667

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 42  DATSSLTKEVASAWECRVGPPDHPASADRIQSLFNDIE 155
           D T+ L  + AS+     GPPDH   +  +++LF++I+
Sbjct: 129 DETTELLAKCASS-----GPPDHSLRSSILETLFSEIK 161


>Z81049-1|CAB61001.2|  503|Caenorhabditis elegans Hypothetical
           protein C48D1.2 protein.
          Length = 503

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +1

Query: 7   RSVGPPSPPRSAMLLPASQRRLRALGSAAWGLPIIQHLPIASRAYSTTS 153
           RSV   +      + PAS RR RAL  A +  P   H    S   S TS
Sbjct: 93  RSVDSNAVEFECPMSPASHRRSRALSPAGYTSPTRVHRDSVSSVSSFTS 141


>L29052-1|AAA27982.2|  503|Caenorhabditis elegans cell death protein
           protein.
          Length = 503

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +1

Query: 7   RSVGPPSPPRSAMLLPASQRRLRALGSAAWGLPIIQHLPIASRAYSTTS 153
           RSV   +      + PAS RR RAL  A +  P   H    S   S TS
Sbjct: 93  RSVDSNAVEFECPMSPASHRRSRALSPAGYTSPTRVHRDSVSSVSSFTS 141


>AF210702-1|AAG42045.1|  503|Caenorhabditis elegans caspase CED-3
           protein.
          Length = 503

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +1

Query: 7   RSVGPPSPPRSAMLLPASQRRLRALGSAAWGLPIIQHLPIASRAYSTTS 153
           RSV   +      + PAS RR RAL  A +  P   H    S   S TS
Sbjct: 93  RSVDSNAVEFECPMSPASHRRSRALSPAGYTSPTRVHRDSVSSVSSFTS 141


>AF077536-10|AAK31408.2|  229|Caenorhabditis elegans Hypothetical
           protein C16A11.7 protein.
          Length = 229

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 133 RAYSTTSNCIPLRHRYSRCWYAHDSVRVANRSLSHSENS 249
           R+ +T+++    RH +S C Y+     +   ++S S NS
Sbjct: 23  RSINTSNSNTSARHAFSPCSYSSSGTEIRKVAISVSSNS 61


>Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 119 CRSHPEPIQRHRIVSH 166
           CR   EP++RHR+ +H
Sbjct: 349 CRKSAEPMKRHRVEAH 364


>Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical
           protein M04G12.4b protein.
          Length = 550

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 119 CRSHPEPIQRHRIVSH 166
           CR   EP++RHR+ +H
Sbjct: 320 CRKSAEPMKRHRVEAH 335


>Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 119 CRSHPEPIQRHRIVSH 166
           CR   EP++RHR+ +H
Sbjct: 349 CRKSAEPMKRHRVEAH 364


>AC025715-3|AAU87815.1|  534|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.5 protein.
          Length = 534

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 134 EPIQRHRIVSH*DTGIRDAGMRTTVCASQIAHSHI 238
           +P++RH  + +    IRD  M+      Q+ HS +
Sbjct: 100 DPVKRHLCIGYLPDSIRDPIMKNKKIVKQLQHSFL 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,859,639
Number of Sequences: 27780
Number of extensions: 159598
Number of successful extensions: 512
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)