Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0034
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   4.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.2  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    20   9.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    20   9.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.5  

>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 100 LPIIQHLPIASRAYSTTSNCIPLRHRYSRC 189
           L +   L + + +  TTS+ +PL   Y  C
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNC 263


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 100 LPIIQHLPIASRAYSTTSNCIPLRHRYSRC 189
           L +   L + + +  TTS+ +PL   Y  C
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNC 263


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 100 LPIIQHLPIASRAYSTTSNCIPLRHRYSRC 189
           L +   L + + +  TTS+ +PL   Y  C
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNC 263


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -1

Query: 265 SAANTQNSPNVRVSDLRRAHCRAHTSISNT 176
           S  +T N P+V++ + ++    + TS+++T
Sbjct: 385 SFPSTLNIPSVKIDEDQKCSIESITSVNST 414


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 100 LPIIQHLPIASRAYSTTSNCIPLRHRYSRC 189
           L +   L + + +  TTS+ +PL   Y  C
Sbjct: 302 LSLTVFLNLVAESMPTTSDAVPLIGSYFNC 331


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 99   PPDHPASADRIQSLFND 149
            PP  P + D+  S FND
Sbjct: 1860 PPPPPRNHDQNNSSFND 1876


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 95  GASRSSSICRSHP 133
           G  R+ S C SHP
Sbjct: 112 GGCRNFSTCSSHP 124


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 95  GASRSSSICRSHP 133
           G  R+ S C SHP
Sbjct: 111 GGCRNFSTCSSHP 123


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 59  HKGGCERLGVPRGA 100
           H  GC+ L +P GA
Sbjct: 98  HVHGCKVLRIPEGA 111


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 294 ASLALSTGVAQLQTRRI 244
           A+ A++TG   + TRR+
Sbjct: 250 ATAAMTTGTTTIPTRRL 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,880
Number of Sequences: 438
Number of extensions: 1825
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)