Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0033
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.3  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.0  
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    25   9.2  
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    25   9.2  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   9.2  

>SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 78

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 250 SQSSPTLRG*AGRSLNPISWSNGLPSSPGLLTLEPPTD 363
           S   P LRG AG  +NP  +S+G  ++   L L+ P D
Sbjct: 33  SHGMPPLRGPAGFPVNPRPFSHGGNANLDRLNLKEPVD 70


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 309 PAYRV*RPPRLAPKGRRGLGMTQEGQTRWR*RSP 208
           PA +   PP    +G+RG GM  E  +  R  SP
Sbjct: 178 PAAQPPFPPPFKMRGKRGFGMRHEHNSELRRHSP 211


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = -1

Query: 262 ERTGNDTGGPDSVALTFAGFIFK*NGN------AAYTGWSTPTRIKLIV 134
           +R G +  G DSV   FAG++FK  G         + G   P R++L++
Sbjct: 30  KRMGQEVPG-DSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLL 77


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = -1

Query: 262 ERTGNDTGGPDSVALTFAGFIFK*NGN------AAYTGWSTPTRIKLIV 134
           +R G +  G DSV   FAG++FK  G         + G   P R++L++
Sbjct: 30  KRMGQEVPG-DSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLL 77


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 207 PANVSATESGPPVSFPVLSYPSGLGGAVAKPDKLVQW 317
           P+N +AT S PP   P+L         +  P + + W
Sbjct: 144 PSNPNATSSSPPPLTPILELIKQNNFCIPSPCRKLVW 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,088
Number of Sequences: 5004
Number of extensions: 50409
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)