Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0033
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0673 + 30794485-30794674,30794930-30795021                       30   1.8  
02_05_0674 + 30800417-30800647                                         28   5.4  
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133...    27   9.5  

>02_05_0673 + 30794485-30794674,30794930-30795021
          Length = 93

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = -1

Query: 340 ITLDYLVVHWTSLSGLATAPPSPEG*ERTGNDTGGPDSVALTF 212
           ++L  +V+ +  +SG A A P   G E TG DT G DSV + F
Sbjct: 10  LSLIVMVMVFLVVSGTAAARPLV-GQEWTGEDTAGDDSVVVRF 51


>02_05_0674 + 30800417-30800647
          Length = 76

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 340 ITLDYLVVHWTSLSGLATAPPSPEG*ERTGNDTGGPDSVALTF 212
           ++L  +V+ +  +SG A A P   G E  G DT G DSV + F
Sbjct: 10  LSLIVMVMVFLVVSGTAAARPLA-GQEWAGEDTAGDDSVVVRF 51


>05_05_0059 +
           22011168-22011662,22012668-22012894,22013029-22013377,
           22013464-22013508,22013589-22013735,22013851-22013988,
           22014126-22014159,22014258-22014430
          Length = 535

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 533 FFVYILNSFFILPTLSVIFYFIFTKYYNYRNSG 631
           +FV  L SF    TL+ + YF  T +YN   +G
Sbjct: 498 YFVQWLGSFQAFLTLTAVLYFSATVFYNTYATG 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,477,143
Number of Sequences: 37544
Number of extensions: 341065
Number of successful extensions: 739
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)