Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0031
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   1.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   1.5  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    26   2.0  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   3.4  
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p...    25   4.5  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    24   7.9  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    24   7.9  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    24   7.9  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 267 HGPVHPAIEDHAQSLLKLLV 208
           H P HP +ED AQ L KL V
Sbjct: 122 HDPDHPTLEDVAQMLGKLKV 141


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 225 AIVRDPRLLDELDRESSPVSSWSNVG 302
           A V D    DELD+ SSP SS S+ G
Sbjct: 679 ATVEDDSPFDELDKFSSPFSSSSSRG 704


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -3

Query: 285 NSLGMTHGPVHPAIEDHAQSLLKLLVPLGAGKGAMIPE*LCQSEHVGRSSIATHCHV 115
           N+  +T+ P HP          K+LV         +    C + H+ R   A+HCH+
Sbjct: 146 NAYSLTYNPAHPWSVIPEDR--KVLVGSTRSDSVFVNTVYCHTCHLYRPPRASHCHL 200


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 160 VRTCRQKQHSHSLPRSLPNLGWNLNIALVVK 68
           V  C++K H  +LP  L N  + L+  LV++
Sbjct: 548 VIVCKRKNHKENLPAQLANGIYRLDDTLVLE 578


>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = -3

Query: 270 THGPVHPAIEDHAQSLLKLLVPLGAGKGAMIPE*LCQSEHVGRSSIATHCHVHFPTWD 97
           TH  VHPA ++HA   + +L          IP      E     ++A +     P W+
Sbjct: 70  THPSVHPANDEHAAFQISVLERHPFTTQTFIPMCRSSDEQAYLIAVAPNAPDGMPDWN 127


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 344 FHI*QWCGQYISSAP 300
           +HI +WC  +IS  P
Sbjct: 263 YHIFKWCSDFISKPP 277


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 144 CLHVRTGTIILGSWHLF 194
           CLH+  GT  +  WH F
Sbjct: 140 CLHILRGTKFIIDWHNF 156


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 240 PRLLDELDRESSPVSSWSNVGRTGDVLPTPLS 335
           P L+ E+ R     + W  V   G +LP+P+S
Sbjct: 198 PLLIKEVTRRCHLENVWQAVYTAGVLLPSPVS 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,068
Number of Sequences: 5004
Number of extensions: 33000
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)