Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0031
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 31 0.25
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 29 0.78
12_02_1207 + 26995852-26996568 26 7.2
09_04_0223 - 15837275-15838279 26 7.2
02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090 26 7.2
01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,414... 26 7.2
08_01_1006 - 10191817-10191822,10192449-10192745,10192826-101929... 26 9.6
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269... 26 9.6
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262... 26 9.6
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 31.1 bits (67), Expect = 0.25
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +3
Query: 144 CLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVL 320
CL +++ IILG +H L+++AL + PR+L +D + P+S VG+ DV+
Sbjct: 832 CLDMKS--IILGKYHYMLYILALAM------QPRMLLTVDEDLKPLSVPVCVGQAVDVV 882
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 29.5 bits (63), Expect = 0.78
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 144 CLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVL 320
CL +++ ILG +H L+++ L + PR+L +D + P+S VG+ DV+
Sbjct: 792 CLDMKS--TILGKYHYILYIIVLAM------QPRMLLTVDEDLKPLSVPVRVGQAVDVV 842
>12_02_1207 + 26995852-26996568
Length = 238
Score = 26.2 bits (55), Expect = 7.2
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = -2
Query: 181 DPRIIVPVRTCRQKQHSHSLP----RSLPNLGWNLNIALVVKCSRVSSRICTDY 32
D I V CR +LP R P W LN+A K +R+ R D+
Sbjct: 23 DAATITVVNRCRYTVWPGALPGGGVRLDPGKSWTLNVAAGTKAARIWPRTGCDF 76
>09_04_0223 - 15837275-15838279
Length = 334
Score = 26.2 bits (55), Expect = 7.2
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = -3
Query: 291 STNSLGMTHGPVHPAIEDHAQSLLKLLVPLGAGKGAMIPE*LCQSEHVGRSSIATHCHVH 112
+++S +HG PA L LLVPLG ++ L S HV + CH
Sbjct: 4 ASSSSSSSHG--FPATASLCTPYL-LLVPLGLLAVVLVVPSL-GSSHVRSDGLGVLCHAG 59
Query: 111 FPTWDGILTLP 79
T DG L P
Sbjct: 60 PSTADGYLVTP 70
>02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090
Length = 625
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 261 PVHPAIEDHAQSLLKLLVPLGAGKGAM 181
P+H ++SL+++LVP AGK M
Sbjct: 317 PLHSISHSSSKSLIQILVPSMAGKSLM 343
>01_01_0563 +
4142351-4144510,4145610-4147259,4147942-4148185,
4148280-4148830
Length = 1534
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 315 HLQCAPHCSTNSLGMTHGPVHPAIEDHAQSLL 220
H + A +TN TH + P + D QS+L
Sbjct: 434 HARSATSSNTNKQNHTHSDISPVMFDQKQSML 465
>08_01_1006 -
10191817-10191822,10192449-10192745,10192826-10192975,
10194558-10195370
Length = 421
Score = 25.8 bits (54), Expect = 9.6
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = -2
Query: 214 PSATRCRKRCHDPRIIVPVRTCRQKQHSHSLPRSLPNLGWNLNIALVVKCSRV 56
PSA R RC P +V R C +H H LP P L L ++C V
Sbjct: 62 PSA-RDLWRCAAP--VVGFRACVHARHFHHLPTWFPALASKGVRELAIECDGV 111
>05_04_0272 +
19624898-19625071,19625909-19626370,19626471-19626905,
19626992-19627237,19627318-19628085,19628245-19628417,
19629337-19629440,19629525-19630127,19630210-19630214
Length = 989
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 249 LDELDRESSPVSSWSNV-GRTGDVLPTPLSNVETR 350
+D L P+SS+S + G D LP+P SNV R
Sbjct: 855 VDTLPSTIRPLSSYSLLDGSLDDGLPSPASNVSFR 889
>01_05_0705 +
24424457-24424948,24425520-24425624,24426097-24426207,
24426675-24426857,24427066-24427192,24427336-24427397,
24427638-24427724,24428703-24428789,24429210-24429323,
24429507-24429635,24429834-24429896,24430333-24430494,
24430611-24430729,24430786-24431794
Length = 949
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 186 HLFLHLVALGVLAAIVRDPRLLDELDRESSPVS 284
HL H++ + V A DPRL +E+ R + P+S
Sbjct: 461 HLISHVLPMLVRAYDDTDPRLQEEVLRRTVPLS 493
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,357,034
Number of Sequences: 37544
Number of extensions: 243638
Number of successful extensions: 686
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -