Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0031
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical pr...    31   0.18 
AF317421-1|AAK69599.1|  235|Caenorhabditis elegans lysosomal-ass...    31   0.18 
Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    27   3.8  
U28737-2|AAA68272.1|  455|Caenorhabditis elegans Patterned expre...    27   5.0  
U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical
           protein C05E11.3 protein.
          Length = 235

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 114 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 212
           E   E+ C C C HV+TG  I+G  H+ + L  L
Sbjct: 33  ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66


>AF317421-1|AAK69599.1|  235|Caenorhabditis elegans
           lysosomal-associated transmembraneprotein protein.
          Length = 235

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 114 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 212
           E   E+ C C C HV+TG  I+G  H+ + L  L
Sbjct: 33  ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66


>Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical
           protein C39E9.7 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 135 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNV 299
           C +  H+R   +  G  HLFL +    V +  +    LL+ L  +++  SSWS +
Sbjct: 428 CSYAGHLRMNQLRSGHLHLFLLVNIFIVNSTAMFFSSLLNVLIAKNTDYSSWSTL 482


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = +1

Query: 25  WKYSRCIFWN*LLSILQPRQC*DSIPSWEVNVAVSGYAASAYMFGLAQLFW 177
           W Y  C+F   L  ++ P     S+  W  +V  SG   + +  G     W
Sbjct: 192 WYYYNCVFQLGLGILMIPEILTSSLSGWHYSVCHSGTLYTGFFSGSVVAIW 242


>U28737-2|AAA68272.1|  455|Caenorhabditis elegans Patterned
           expression site protein23 protein.
          Length = 455

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 132 LCCFCLHVRTGTIILGSWHLFLHLVA 209
           LC F +  +TG II+ SW L   L++
Sbjct: 137 LCRFIIGTQTGAIIVVSWSLTTELIS 162


>U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical
           protein C44C1.4a protein.
          Length = 547

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 336 LTVVWAVHLQCAPHCSTNSLGMTHGPVHPAIEDHAQSLLK 217
           L +++A+  + AP    NSL     P HP I     +LLK
Sbjct: 378 LVLLYALRFENAPGNELNSLISQLRPQHPKIHQTVSTLLK 417


>U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical
           protein F47G3.1 protein.
          Length = 886

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 348 EFPHLTVVWAVHLQCAPH 295
           E P+ T+VWAVH   AP+
Sbjct: 68  EKPNDTLVWAVHTSSAPY 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,225,688
Number of Sequences: 27780
Number of extensions: 190105
Number of successful extensions: 467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)