Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0022
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    25   3.5  
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |...    25   3.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   6.1  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    24   6.1  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    24   6.1  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    24   6.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    24   8.0  

>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 9   QYNLSKPDYQKCICYTK 59
           Q+++ KPD   C C+T+
Sbjct: 224 QFDIVKPDSSSCCCFTR 240


>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 233 MLSSASNVVGKLALTELPFPL 295
           +L S  NV+ K AL +LP+PL
Sbjct: 19  VLLSQGNVLKKTALFQLPYPL 39


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 265 TGINRATISTNYDSGTAVCSGLAECTRAS 351
           T + RAT S NY++ +A  S L   + AS
Sbjct: 54  TLLKRATTSYNYNTSSASSSSLTSSSAAS 82


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 290 EMVALLMPVCPRHYWLNLTYTTLRTGSQ 207
           EM  +L  +CPRH+  N   + L    Q
Sbjct: 275 EMQIMLHGICPRHFMFNRGASLLAVAMQ 302


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 248 SNVVGKLALTELPFPLTM 301
           +NV+G+LA+T   FPL +
Sbjct: 136 TNVIGQLAITSALFPLLL 153


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 12  YNLSKPDYQKCICYTKLSRVLY 77
           +  SK  ++ C C   LS VLY
Sbjct: 106 FQFSKEKFKPCSCQVSLSSVLY 127


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 351  ASAGTLSEAAAHSCTAVIVSGNG 283
            +S+G   E+  H C   +++GNG
Sbjct: 1304 SSSGLNYESEIHQCIRTLIAGNG 1326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,634
Number of Sequences: 5004
Number of extensions: 26044
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)