Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0022
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0312 - 7168332-7168408,7168492-7168621,7168793-7168861,716... 34 0.029
01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771... 29 1.4
05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850... 28 1.9
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431... 27 5.7
08_01_0577 + 5132876-5132894,5134352-5134845,5134937-5135162,513... 26 7.6
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 26 7.6
04_04_1644 + 35015849-35016838 26 7.6
01_06_1226 - 35518981-35519295,35519876-35520745 26 7.6
01_01_0952 + 7469812-7470020,7471013-7471448 26 7.6
>09_02_0312 -
7168332-7168408,7168492-7168621,7168793-7168861,
7168947-7169066,7169356-7169440,7169565-7169650,
7169762-7169914,7170008-7170130,7170974-7171357
Length = 408
Score = 34.3 bits (75), Expect = 0.029
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 182 GSRRETLIVGFLCAAWYMLSSASNVVGKLALTELPFPLTMTAVQ 313
G +TL +G L WY+ + N+ K L P+P+ +T VQ
Sbjct: 100 GGLAKTLQLGALFGLWYLFNIYFNIYNKQVLKVFPYPINITNVQ 143
>01_01_0977 -
7717808-7717837,7718227-7718327,7718449-7718548,
7718706-7718822,7718913-7718990,7719980-7720058,
7720184-7720249,7720373-7720441,7720890-7721188
Length = 312
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 200 LIVGFLCAAWYMLSSASNVVGKLALTELPFPLTMTAV 310
LI GF WY L+ N++ K P+P ++ +
Sbjct: 114 LITGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVI 150
>05_03_0110 +
8500204-8500460,8502544-8502612,8502725-8502790,
8502885-8502963,8504270-8504390,8504486-8504581,
8505403-8505515,8505612-8505689,8507777-8507893,
8508194-8508293,8508463-8508563,8509093-8509110
Length = 404
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 188 RRETLIVGFLCAAWYMLSSASNVVGKLALTELPFP 292
R L+ GF WY L+ N++ K P+P
Sbjct: 96 RYPALVTGFFFFMWYFLNVIFNILNKKIFDYFPYP 130
>01_07_0359 - 43042675-43042758,43042956-43043024,43043099-43043159,
43043260-43043768,43044545-43045153,43045697-43045972,
43046581-43046769,43047006-43047116,43047621-43047908,
43047990-43048041,43048648-43048824,43049249-43049314,
43049675-43049929,43050071-43050577,43050807-43050886,
43050974-43051207
Length = 1188
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 279 SVNASLPTTLLAELNIYHAAHRKPTISVSRLEPVVPIALFF 157
SVN + TTLL+E ++ R I+ +L VP +LFF
Sbjct: 1014 SVNQTAQTTLLSETSMAALLLRGLAIAPMQLVARVPTSLFF 1054
>08_01_0577 +
5132876-5132894,5134352-5134845,5134937-5135162,
5135695-5135917,5136315-5136528,5136769-5136806,
5136977-5137142
Length = 459
Score = 26.2 bits (55), Expect = 7.6
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = +2
Query: 134 CFRVLSDKKKSAMGTTGSRRET---LIVGFLCAAWYMLSSASNVVGKLALTELPFP-LTM 301
C +D K+S R E L + A W+ L+ N+ K L P+P LT
Sbjct: 77 CAASAADDKESKTEVVPVRSEAAQKLKISIYFATWWALNVIFNIYNKKVLNAFPYPWLTS 136
Query: 302 T 304
T
Sbjct: 137 T 137
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 327 AAAHSCTAVIVSGNGSSVNASLPTTL--LAELNIYH 226
AAA CTA+ S + S V LP+ + LA+ + +H
Sbjct: 214 AAAGMCTALAASSSNSGVEDPLPSYMEALADFSDFH 249
>04_04_1644 + 35015849-35016838
Length = 329
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -1
Query: 273 NASLPTTLLAELNIYHAAHRKPTISVSRLEPVVPIALFFLSESTLKQSCYH 121
+A+ LLAE + AAHR+ + S L P++ + S +K +H
Sbjct: 152 HAAESVQLLAEHGVDLAAHRRHGVRASALAPLLMSSGLVCSHGAVKWVTFH 202
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 26.2 bits (55), Expect = 7.6
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -1
Query: 348 SAGTLSEAAAHSCTAVIVSGNGSSVNASLPTTLLAELNIYHAAHRK 211
S+GTL AA + G+G V + LP++ LAEL++ A+ R+
Sbjct: 93 SSGTLRLDAAADVGYFHLEGHG--VPSQLPSSALAELSLVDASARR 136
>01_01_0952 + 7469812-7470020,7471013-7471448
Length = 214
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 196 LAPGAGCTHCAFFFIRKYSKAK 131
+ PGAG H + +F+R Y AK
Sbjct: 95 IVPGAGPLHSSAYFVRLYLPAK 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,974,720
Number of Sequences: 37544
Number of extensions: 161999
Number of successful extensions: 387
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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