Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0022
         (357 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.16 
SB_29192| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_44531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_17196| Best HMM Match : Trypsin (HMM E-Value=0.027)                 27   5.9  
SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)               27   5.9  
SB_23667| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_28556| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  

>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 185  SRRETLIVGFLCAAWYMLSSASNVVGKLALTELPFPLTMTAVQ 313
            S  E+L V  L  ++  +SS +NV+ K  L + P P+T+  VQ
Sbjct: 1589 SSSESLFVAILHRSFPAVSSTNNVITKRLLNKFPHPVTVAFVQ 1631


>SB_29192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = -1

Query: 309 TAVIVSGNGSSVNASL--PTTLLAELNIYHAAHRKPTISVSRLEPVVPIALFFLSESTL- 139
           T++  +G+ + + A +   T  LA  +IY A H  P +  S+L     + +  L  STL 
Sbjct: 142 TSIAYTGSVARIVAKVNSDTIALARWSIYRALHLNPAVEHSQLPDGTHLLISCLRPSTLT 201

Query: 138 ----KQSCYHRITEDL*FNNSLLF 79
               K S Y R+ +      +LLF
Sbjct: 202 RLFQKPSRYQRVLQSRDTLTNLLF 225


>SB_44531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 324 AAHSCTAVIVSGNGSSVNASLPTTLLAELNIYHAAHRKPTISVS 193
           A H   AV++S NG++ ++           IYH     PT   S
Sbjct: 66  ATHGTPAVLISNNGTNYSSQEFREFTKAWEIYHVTRNSPTPGTS 109


>SB_17196| Best HMM Match : Trypsin (HMM E-Value=0.027)
          Length = 379

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 160 KKRNGYNRLQARDTNSWLPVRSVVYVKFSQ*CRGQTGINRATISTNYDSGTAVC 321
           ++R    R+   DT   +P+R+V    FS      TG     IST +   +A C
Sbjct: 142 RRRRFRRRIFGADTRLEIPIRAVRRTPFSSIVHISTGCTGTLISTRHVLTSAHC 195


>SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 3/106 (2%)
 Frame = -1

Query: 354 RASAGTLSEAAAHSCTAVIVSGNGSSVNASLPTTLLAELNIYHAAHRKPTISVSRLEPVV 175
           + S G  S+        V    NG S N S  T L AEL+  H        S+ + +  +
Sbjct: 25  KVSRGCTSQIRDVIANTVNEVSNGLSYNGSKRTLLPAELSALHFKLHAWIYSIWKSQYGI 84

Query: 174 PIALFFLSESTL---KQSCYHRITEDL*FNNSLLFRTIHEIILCNI 46
           P + +F     L     +CY  + + + + N L+    H I L  I
Sbjct: 85  PCSRYFSEFPQLPSYNTACYVAVVKAVHWEN-LMIEYHHTICLQEI 129


>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
          Length = 322

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 122 TESLKIFNSIIHYYSVQYTR*FCVTYTFLVI 30
           +  +K  NS I Y+  +  + FC TYT L++
Sbjct: 135 SRKIKCDNSQIDYHPTRSLKHFCNTYTILIL 165


>SB_23667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 253 CRGQTGINRATISTNYDSGTAVCSGLAECTR 345
           C G  GI R  I   YD  T +C+G    TR
Sbjct: 343 CNGYDGITR--ICNGYDGTTRICNGYDGTTR 371


>SB_28556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 120 RITEDL*FNNSLLFRTIHEIILCNIYIFGNQACLN 16
           +++EDL +N    +R I  +I+   YIF N + +N
Sbjct: 266 KMSEDLLYNQRNRWRFIQSLIIYAKYIFYNSSVIN 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,671,154
Number of Sequences: 59808
Number of extensions: 194745
Number of successful extensions: 459
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)