Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0018
(715 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 198 3e-51
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 179 1e-45
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 179 1e-45
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 144 7e-35
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 139 1e-33
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 139 1e-33
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 132 2e-31
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 132 2e-31
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 132 2e-31
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 124 4e-29
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 109 2e-24
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 103 9e-23
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 102 3e-22
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 94 1e-19
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 94 1e-19
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 87 1e-17
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 84 1e-16
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 80 2e-15
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 78 5e-15
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 78 5e-15
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 77 1e-14
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 77 2e-14
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 76 3e-14
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 74 1e-13
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 74 1e-13
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 71 6e-13
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 69 4e-12
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 68 5e-12
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 68 5e-12
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 67 9e-12
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 64 7e-11
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 64 9e-11
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 64 1e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 64 1e-10
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 63 2e-10
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 63 2e-10
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 62 3e-10
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 62 4e-10
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 61 8e-10
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 61 8e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 60 1e-09
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 60 1e-09
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 60 1e-09
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 59 3e-09
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 59 3e-09
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 57 1e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 56 2e-08
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 56 3e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 3e-08
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 55 4e-08
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 54 9e-08
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 52 3e-07
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 52 5e-07
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 51 9e-07
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 49 3e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 48 5e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 48 5e-06
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 48 6e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 47 1e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 45 6e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 43 2e-04
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 43 2e-04
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 43 2e-04
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 36 0.035
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 31 0.76
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 31 1.0
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 30 1.3
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 2.3
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 29 4.0
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.3
At2g33420.1 68415.m04096 expressed protein 28 5.3
At5g22960.1 68418.m02684 serine carboxypeptidase S10 family prot... 28 7.1
At3g56190.1 68416.m06245 alpha-soluble NSF attachment protein 2 ... 28 7.1
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 7.1
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 27 9.3
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 27 9.3
At5g48950.2 68418.m06055 thioesterase family protein contains Pf... 27 9.3
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 27 9.3
At2g25460.1 68415.m03049 expressed protein 27 9.3
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 9.3
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 9.3
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 9.3
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 27 9.3
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 198 bits (483), Expect = 3e-51
Identities = 90/163 (55%), Positives = 118/163 (72%)
Frame = +2
Query: 227 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE 406
++ R+ D D L PF KNFY P V + EVEEYR E+TV G ++ P++ F +
Sbjct: 46 ESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103
Query: 407 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN 586
FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G+A+TGSGKTL+Y+LPAIVH+N
Sbjct: 104 VGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNA 163
Query: 587 QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 715
QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++ TC+
Sbjct: 164 QPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCI 206
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 179 bits (436), Expect = 1e-45
Identities = 78/152 (51%), Positives = 112/152 (73%)
Frame = +2
Query: 260 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 439
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 440 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 619
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 620 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 715
L+LAPTRELA QIQ+ + FG S VR+TC+
Sbjct: 241 VLILAPTRELAVQIQEESRKFGLRSGVRSTCI 272
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 179 bits (436), Expect = 1e-45
Identities = 78/152 (51%), Positives = 112/152 (73%)
Frame = +2
Query: 260 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 439
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 440 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 619
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 620 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 715
L+LAPTRELA QIQ+ + FG S VR+TC+
Sbjct: 241 VLILAPTRELAVQIQEESRKFGLRSGVRSTCI 272
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 144 bits (348), Expect = 7e-35
Identities = 64/157 (40%), Positives = 98/157 (62%)
Frame = +2
Query: 245 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 424
D S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 425 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 604
+ +K Y++PT IQ Q PI +SG++++G+A+TGSGKT A++LP IVHI +QP ++R
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR 298
Query: 605 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 715
+GPI ++ APTRELA QI A F +R + V
Sbjct: 299 DEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAV 335
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 139 bits (337), Expect = 1e-33
Identities = 63/139 (45%), Positives = 88/139 (63%)
Frame = +2
Query: 245 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 424
D + +PF KNFY + + + V YR E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 425 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 604
+ +K + Y++P PIQAQ PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 466
Query: 605 GDGPIALVLAPTRELAQQI 661
GDGPI LV+APTREL QQI
Sbjct: 467 GDGPIGLVMAPTRELVQQI 485
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 139 bits (337), Expect = 1e-33
Identities = 64/153 (41%), Positives = 91/153 (59%)
Frame = +2
Query: 245 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 424
D + +PF KNFY + + + EV YR E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 425 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 604
+ +K + Y++P PIQ Q PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 599
Query: 605 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 703
GDGPI LV+APTREL QQI F +R
Sbjct: 600 GDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIR 632
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 132 bits (320), Expect = 2e-31
Identities = 65/141 (46%), Positives = 87/141 (61%)
Frame = +2
Query: 293 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 473 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 652
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 653 QQIQQVAADFGHTSYVRNTCV 715
QIQ+ A FG +S + TC+
Sbjct: 244 TQIQEEAVKFGRSSRISCTCL 264
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 132 bits (320), Expect = 2e-31
Identities = 65/141 (46%), Positives = 87/141 (61%)
Frame = +2
Query: 293 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 473 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 652
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 653 QQIQQVAADFGHTSYVRNTCV 715
QIQ+ A FG +S + TC+
Sbjct: 244 TQIQEEAVKFGRSSRISCTCL 264
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 132 bits (320), Expect = 2e-31
Identities = 65/141 (46%), Positives = 87/141 (61%)
Frame = +2
Query: 293 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 472
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 473 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 652
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 653 QQIQQVAADFGHTSYVRNTCV 715
QIQ+ A FG +S + TC+
Sbjct: 244 TQIQEEAVKFGRSSRISCTCL 264
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 124 bits (300), Expect = 4e-29
Identities = 65/151 (43%), Positives = 91/151 (60%), Gaps = 4/151 (2%)
Frame = +2
Query: 275 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 442
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 443 TMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 622
+ G+ PTPIQAQ WPIA+ +++V +A+TGSGKTL Y++PA + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 623 LVLAPTRELAQQIQQVAADFGHTSYVRNTCV 715
L+LAPTRELA QIQ A FG +S + TC+
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCL 541
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 109 bits (262), Expect = 2e-24
Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Frame = +2
Query: 284 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 463
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 464 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLA 634
TPIQ QG P+ +SG++++G+A TGSGKTL ++LP I+ + PI G+GPIALV+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVIC 180
Query: 635 PTRELAQQIQQVAADF 682
P+RELA+Q V F
Sbjct: 181 PSRELAKQTYDVVEQF 196
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 103 bits (248), Expect = 9e-23
Identities = 46/129 (35%), Positives = 80/129 (62%), Gaps = 3/129 (2%)
Frame = +2
Query: 338 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 517
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 518 GVAQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGH 688
G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Query: 689 TSYVRNTCV 715
R T +
Sbjct: 415 YLGFRVTSI 423
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 102 bits (244), Expect = 3e-22
Identities = 50/135 (37%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Frame = +2
Query: 287 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 466
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 467 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAP 637
PIQ QG P+ ++G++++G+A TGSGKTL ++LP I+ + PI G+GPI L++ P
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230
Query: 638 TRELAQQIQQVAADF 682
+RELA+Q +V F
Sbjct: 231 SRELARQTYEVVEQF 245
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 93.9 bits (223), Expect = 1e-19
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = +2
Query: 437 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 616
V + G+ P+PIQAQ WPIAM +++V +A+TGSGKTL Y++P +H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGP 302
Query: 617 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 715
LVL+PTRELA QIQ A FG +S + C+
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSKISCACL 335
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 332 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 421
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 93.9 bits (223), Expect = 1e-19
Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 6/136 (4%)
Frame = +2
Query: 326 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 499
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 500 SGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQ 667
G++L+G+A+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISD 209
Query: 668 VAADFGHTSYVRNTCV 715
V + G +++ CV
Sbjct: 210 VLREAGEPCGLKSICV 225
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 87.0 bits (206), Expect = 1e-17
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 8/166 (4%)
Frame = +2
Query: 230 NMRRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYF 400
N R WD + PF + +P P ++ + + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 401 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 580
E + + + ++ Y +PTP+Q PI + G++L+ AQTGSGKT A+ P I I
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGI 221
Query: 581 NNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVR 703
++R G P+A++L+PTRELA QI A F + + V+
Sbjct: 222 MKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVK 267
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 83.8 bits (198), Expect = 1e-16
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Frame = +2
Query: 230 NMRRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 400
N R WD PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 401 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 580
E + + + ++ Y +PTP+Q PI +G++L+ AQTGSGKT A+ P I I
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGI 208
Query: 581 NNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVR 703
I R G P+A++L+PTRELA QI A F + + V+
Sbjct: 209 MKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVK 254
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 79.8 bits (188), Expect = 2e-15
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Frame = +2
Query: 317 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 490
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 491 IAMSGKNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTRELAQQI 661
A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 662 QQVAADFG 685
+ A G
Sbjct: 203 EDQAKMLG 210
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 78.2 bits (184), Expect = 5e-15
Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 8/166 (4%)
Frame = +2
Query: 230 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 400
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 401 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 580
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 581 NNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVR 703
+ R G P A++L+PTRELA QI A F + + V+
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVK 259
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 78.2 bits (184), Expect = 5e-15
Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 8/166 (4%)
Frame = +2
Query: 230 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 400
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 401 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 580
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 581 NNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVR 703
+ R G P A++L+PTRELA QI A F + + V+
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVK 259
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/102 (39%), Positives = 62/102 (60%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
FE N V +K GYK PTPIQ + P+ +SG ++V +A+TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 578 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 703
+ P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 90 LKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLR 128
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 76.6 bits (180), Expect = 2e-14
Identities = 44/104 (42%), Positives = 61/104 (58%)
Frame = +2
Query: 359 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 538
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 539 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 670
GKT A+ LP + + +P +R L+L PTRELA QI +
Sbjct: 216 GKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSM 257
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 75.8 bits (178), Expect = 3e-14
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Frame = +2
Query: 341 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 509 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 658
A TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 73.7 bits (173), Expect = 1e-13
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Frame = +2
Query: 326 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 505
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 506 KNLVGVAQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 661
K++V A+TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +2
Query: 446 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIA 622
MG++ PT +QAQ P+ +SG++++ A TG+GKT+AY+ P I H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 623 LVLAPTRELAQQIQQVAADFGH 688
LV+ PTREL Q+ + H
Sbjct: 108 LVIVPTRELCLQVYETLEKLLH 129
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 71.3 bits (167), Expect = 6e-13
Identities = 45/138 (32%), Positives = 70/138 (50%)
Frame = +2
Query: 266 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 445
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 446 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 625
MG+ T IQA+ P M G++++G A+TGSGKTLA+++PA V + + +G L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVL 230
Query: 626 VLAPTRELAQQIQQVAAD 679
V+ PTRELA Q VA +
Sbjct: 231 VICPTRELAIQSYGVAKE 248
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 68.5 bits (160), Expect = 4e-12
Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Frame = +2
Query: 374 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 553
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+AQTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 554 YILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQ 667
+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 68.1 bits (159), Expect = 5e-12
Identities = 45/112 (40%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Frame = +2
Query: 362 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSG 541
V VEV NP + +++ +K G + PIQA + + + G +LVG A+TG G
Sbjct: 87 VEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQG 145
Query: 542 KTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADF 682
KTLA++LP + + N P + G P LVL PTRELA +QVAADF
Sbjct: 146 KTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA---KQVAADF 194
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 68.1 bits (159), Expect = 5e-12
Identities = 36/90 (40%), Positives = 56/90 (62%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
FE ++ + K +G ++PTP+Q P ++G++++G+AQTGSGKT A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
Query: 578 INNQPPIRRGDGPIALVLAPTRELAQQIQQ 667
+ P G ALV+ PTRELA Q+ +
Sbjct: 119 RLAEDPY----GVFALVVTPTRELAFQLAE 144
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 67.3 bits (157), Expect = 9e-12
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Frame = +2
Query: 389 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 568
++ F+E + V ++ + + PT IQ G P M K++V + TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLP- 169
Query: 569 IVHINNQPPIRRGD-----GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 715
IV + + G P +VL PTREL++Q+ +VA H + R+ V
Sbjct: 170 IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILV 223
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 64.5 bits (150), Expect = 7e-11
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +2
Query: 329 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 508
+E+ + + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 509 NLVGVAQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 679
+++G A+TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEE 183
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 64.1 bits (149), Expect = 9e-11
Identities = 30/90 (33%), Positives = 56/90 (62%)
Frame = +2
Query: 389 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 568
++ F + D ++G+K Y + T +Q+ P A+ G++++G A+TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 569 IVHINNQPPIRRGDGPIALVLAPTRELAQQ 658
+ ++ + DG ++++PTRELA Q
Sbjct: 130 LEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/96 (32%), Positives = 56/96 (58%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 578 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 685
I+ + + A+++ PTRELA Q QV + G
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/96 (32%), Positives = 56/96 (58%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 578 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 685
I+ + + A+++ PTRELA Q QV + G
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Frame = +2
Query: 431 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 610
+ +K G++ T +Q PI + GK+++ A+TG+GKT+A++LPAI + PP R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 611 GP---IALVLAPTRELAQQ 658
I LV+ PTRELA Q
Sbjct: 455 RQPPIIVLVVCPTRELASQ 473
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
F++ +G++ G+K T +Q P+ + GK+++ A+TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 578 INNQPPIRRGDGP---IALVLAPTRELAQQ 658
+ PP R + I LV+ PTRELA Q
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Frame = +2
Query: 431 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 610
+ +K GY+ T +Q PI + GK+++ A+TG+GKT+A++LP+I + PP +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 611 --GPI-ALVLAPTRELAQQ 658
PI ALV+ PTRELA Q
Sbjct: 127 KRPPILALVICPTRELANQ 145
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 62.1 bits (144), Expect = 4e-10
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +2
Query: 425 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIR 601
+ + + + G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 602 RGDGPIALVLAPTRELAQQIQQ 667
RG P+ LVLAPTRELA+Q+++
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK 196
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 60.9 bits (141), Expect = 8e-10
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +2
Query: 425 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIR 601
+ + +K G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 602 RGDGPIALVLAPTRELAQQIQQ 667
RG P LVLAPTRELA+Q+++
Sbjct: 187 RGKNPQCLVLAPTRELARQVEK 208
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 60.9 bits (141), Expect = 8e-10
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Frame = +2
Query: 449 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 619
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP + +
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 92
Query: 620 ALVLAPTRELAQQIQQVAADFGHT 691
++++PTREL+ QI +VA F T
Sbjct: 93 GVIISPTRELSAQIHKVAEPFVST 116
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/94 (32%), Positives = 57/94 (60%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 578 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 679
I+ + + + A++L PTRELA Q QV +
Sbjct: 216 IDPENNVIQ-----AVILVPTRELALQTSQVCKE 244
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/94 (32%), Positives = 56/94 (59%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 578 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 679
I+ + + A++L PTRELA Q QV +
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/94 (32%), Positives = 56/94 (59%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 578 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 679
I+ + + A++L PTRELA Q QV +
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 59.3 bits (137), Expect = 3e-09
Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Frame = +2
Query: 386 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--LAYI 559
PI+ F++ D V +GV GYK+P+ IQ + + G++++ AQ+G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 560 LPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 715
+ IV+I+++ LVL+P+RELA Q ++ G HT+ + C+
Sbjct: 80 VCQIVNISSRK-------VQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACI 125
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 58.8 bits (136), Expect = 3e-09
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Frame = +2
Query: 449 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 619
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP + +
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 93
Query: 620 ALVLAPTRELAQQIQQVA 673
++++PTREL+ QI +VA
Sbjct: 94 GVIISPTRELSAQIHKVA 111
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/86 (36%), Positives = 49/86 (56%)
Frame = +2
Query: 416 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 595
P+++ ++ +G+ PT IQ + P +G++ + AQTGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ-- 141
Query: 596 IRRGDGPIALVLAPTRELAQQIQQVA 673
A+++ PTREL Q+ +VA
Sbjct: 142 ---RSSVQAVIVVPTRELGMQVTKVA 164
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Frame = +2
Query: 479 QGWPIAMSGKNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTREL 649
Q P A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 650 AQQIQQVAADFG 685
Q++ A G
Sbjct: 62 CVQVEDQAKMLG 73
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Frame = +2
Query: 410 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 589
+ P +++ ++ G PIQ A+ G++++ A+TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 590 ----PPIRR-GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 715
RR G P LVLAPTRELA+Q+++ + Y+ CV
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCV 212
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 55.6 bits (128), Expect = 3e-08
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Frame = +2
Query: 344 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMSG--KNL 514
+N + SG + FE+ N + +G+ M +++P+ IQA P+ M+ K+L
Sbjct: 75 SNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHL 134
Query: 515 VGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 685
+ A GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 135 IAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 55.2 bits (127), Expect = 4e-08
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
FEE PD + ++ G+ PT +Q+ P + G + V + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 578 INNQPPIRRGDGP--------IALVLAPTRELAQQI 661
I R A+++AP+REL QI
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 54.0 bits (124), Expect = 9e-08
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
F E + + + +K + P IQA + + GK+ + Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 578 INN---QPPIRRGDG-PIALVLAPTRELAQQI 661
+ Q + G P +VL PT ELA Q+
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 52.4 bits (120), Expect = 3e-07
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Frame = +2
Query: 359 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 538
T G+E PI F + + V +GV G+++P+ IQ + + G++++ AQ+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 539 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 715
GKT L ++ + AL+L+PTRELA Q ++ G H + + C+
Sbjct: 84 GKTSMIALSVCQVVDTSSREVQ-----ALILSPTRELATQTEKTIQAIGLHANIQAHACI 138
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +2
Query: 464 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLA 634
TP+QA P+ S K++ A TGSGKTLA+++P + + PP + + ++++
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIIS 97
Query: 635 PTRELAQQIQQVAADFGHT 691
PTREL+ QI VA F T
Sbjct: 98 PTRELSTQIYNVAQPFVST 116
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 50.8 bits (116), Expect = 9e-07
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Frame = +2
Query: 374 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 553
EVH + F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 554 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR-NTCV 715
+ + ++ + ALVLAPTRELAQQI++V G V+ + CV
Sbjct: 93 FCSGVLQQLDYALLQCQ-----ALVLAPTRELAQQIEKVMRALGDYQGVKVHACV 142
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 49.2 bits (112), Expect = 3e-06
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT + +
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100
Query: 578 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR-NTCV 715
++ + ALVLAPTRELAQQI++V G V+ + CV
Sbjct: 101 LDFSLIQCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 142
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 48.4 bits (110), Expect = 5e-06
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 16/97 (16%)
Frame = +2
Query: 425 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHI------- 580
+ + + + +KEPT IQ + +A GK+++G A+TGSGKTLA+ LP + +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 581 -------NNQPPIRRGDGPI-ALVLAPTRELAQQIQQ 667
+ DG + AL++ PTRELA Q+ +
Sbjct: 261 GKLYALKGEEAQKYAADGYLRALIITPTRELALQVTE 297
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = +2
Query: 398 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 577
F+E+ + + G + T +Q + GK+ + A+TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 578 I----NNQPPIRRGDGPIALVLAPTRELAQQI 661
+ N+ + + AL+L PTRELA QI
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 48.0 bits (109), Expect = 6e-06
Identities = 31/90 (34%), Positives = 51/90 (56%)
Frame = +2
Query: 416 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 595
PD ++ G+ G+++P+ IQ +G G +++ AQ+G+GKT + + ++
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLV 108
Query: 596 IRRGDGPIALVLAPTRELAQQIQQVAADFG 685
+ ALVLAPTRELAQQI++V G
Sbjct: 109 QCQ-----ALVLAPTRELAQQIEKVMRALG 133
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 47.2 bits (107), Expect = 1e-05
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Frame = +2
Query: 275 NKNFYDPH---PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 436
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 437 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI----NNQPPIRR 604
+ G + T +Q + GK+ + A+TG+GK++A++LPAI + N+ + +
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHK 449
Query: 605 GDGPIALVLAPTRELAQQI 661
L+L PTRELA QI
Sbjct: 450 VAPIFVLILCPTRELASQI 468
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 44.8 bits (101), Expect = 6e-05
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Frame = +2
Query: 419 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN---- 586
D V ++ G+ P+ QA P +SGK+++ A+TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALD 148
Query: 587 QPPIRRGDGP-----IALVLAPTRELAQQI 661
R + P I+L+L P L +Q+
Sbjct: 149 SEVTNREERPFPLKNISLILCPNVMLCEQV 178
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +2
Query: 425 VQQGVKTMGYKEPTPIQAQGW--PIAMSG--KNLVGVAQTGSGKTLAYILPAIVHINNQP 592
+++ ++ MG P+Q W I G +++ + TGSGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 593 PIRRGDGPIALVLAPTRELAQQIQQV 670
P+R ALV+ PTR+LA Q++ V
Sbjct: 91 PVR---CLRALVVLPTRDLALQVKDV 113
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 449 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 625
G++ P+ +Q + P A+ G +++ A++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 626 VLAPTRELAQQI 661
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 449 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 625
G++ P+ +Q + P A+ G +++ A++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 626 VLAPTRELAQQI 661
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 35.5 bits (78), Expect = 0.035
Identities = 24/84 (28%), Positives = 38/84 (45%)
Frame = +2
Query: 428 QQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRG 607
+ +K +G QA+ A++GKN+ T SGK+L Y +P + +
Sbjct: 383 KSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVPVF------EELCKD 436
Query: 608 DGPIALVLAPTRELAQQIQQVAAD 679
AL L PT+ LAQ + +D
Sbjct: 437 TNSCALYLFPTKALAQDQLRALSD 460
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.1 bits (67), Expect = 0.76
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +2
Query: 380 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYI 559
H Y E D + G K P+Q Q +M K+ + TG GK+L Y
Sbjct: 180 HETPSYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQ 239
Query: 560 LPA 568
LPA
Sbjct: 240 LPA 242
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 440 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 574
K G P Q + MSG ++ + TG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 524 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 661
A++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 7 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 449 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 574
GY Q Q + + G + + V TG+GK+L Y +PA++
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
protein, chloroplast / 54 chloroplast protein / SRP54
(FFC) identical to Swiss-Prot:P37107 signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC) [Arabidopsis
thaliana]
Length = 564
Score = 28.7 bits (61), Expect = 4.0
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +2
Query: 299 PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE---ANFPDYVQQGVKTMGYKEP-- 463
P + K SP ++ E N V + +EV P + A P+ ++ K G E
Sbjct: 429 PGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPERRKRIAKDSGKTEQQV 488
Query: 464 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 595
+ + AQ + + + KNL+GV + GS L+ + A+ PP
Sbjct: 489 SALVAQIFQMRVKMKNLMGVMEGGSIPALSGLEDALKAEQKAPP 532
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 660 ICCANSLVGAKTKAIGPSPLRI 595
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 19 SKRIHSLNKHLQLNPKI 69
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At5g22960.1 68418.m02684 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase III [Precursor]
(SP:P37891) [Oryza sativa]
Length = 190
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +2
Query: 239 RPDWDSVS--LQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHN 385
R D DSVS L F + F+ HP + K Y E H + VHN
Sbjct: 111 RHDEDSVSNDLYDFLQAFFKEHPNLAKDDFYITGESYAGHYIPALASRVHN 161
>At3g56190.1 68416.m06245 alpha-soluble NSF attachment protein 2 /
alpha-SNAP2 / ASNAP2 identical to alpha-soluble NSF
attachment protein 2 / alpha-SNAP2 SP:Q9SPE6 from
[Arabidopsis thaliana]
Length = 289
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 481 RLADSYVWKEFSW-RSSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTT 657
+ A+SY + SW ++ + + HL S H AY+E + C Y++V T
Sbjct: 38 KAANSYKLAK-SWDQAGKAYLKLADCHLKSDSKHDAANAYAEA--AKC-----YKKVDTN 89
Query: 658 NSASCCRFWTHILC 699
+ASC +I C
Sbjct: 90 EAASCLERAVNIFC 103
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 19 SKRIHSLNKHLQLNPKI 69
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 230 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 397
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 398 FEE 406
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 230 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 397
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 398 FEE 406
EE
Sbjct: 811 NEE 813
>At5g48950.2 68418.m06055 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 127
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 526 SNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSAS 669
++GF++ G+HL+ H H +P A E +++ F + + + T + S
Sbjct: 66 ASGFKRVAGIHLSIH--HLRPAALGEIVFAESFPVSVGKNIQTEDLKS 111
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 180 LEDLEDLVGKKNSLEVRTCVAQIGILFHSNLSTKTFMIH 296
+ D++ +GK V C A++G+ F S +T M H
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPH 568
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 9.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 155 ETNYRRICCLLQIWNHRFHGYY 90
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 287 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 463
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 464 TPIQAQGWPIAMS 502
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 287 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 463
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 464 TPIQAQGWPIAMS 502
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 287 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 463
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 464 TPIQAQGWPIAMS 502
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 497 MSGKNLVGVAQTGSGKTLAYILPAIV 574
M+G++++ + G GK+L Y LPA++
Sbjct: 102 MTGRDVLVIMAAGGGKSLCYQLPAML 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,477,541
Number of Sequences: 28952
Number of extensions: 298072
Number of successful extensions: 984
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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