Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0009
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 253 2e-68
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 147 1e-36
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 133 2e-32
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 120 1e-28
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 29 0.65
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 26 3.5
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 26 3.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 3.5
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 26 4.6
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 4.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.6
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 25 6.1
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 6.1
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 8.0
SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 8.0
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 253 bits (619), Expect = 2e-68
Identities = 111/183 (60%), Positives = 144/183 (78%)
Frame = +3
Query: 30 MPSEMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHY 209
M E+ITLQ GQCGNQIG +FW+QLC+EHGI P+G LE FA+ G DRKDVFFYQ+DD Y
Sbjct: 1 MGREIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRY 60
Query: 210 IPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASGYAQGEKLNEEVFD 389
IPRA+L+DLEPRV++ I++ Y LYNPEN+ ++K+GGGAGNNWA+GY+ E++ E++ D
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGYSHAERIFEDIMD 120
Query: 390 IINREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRFS*ETCSDIQCLPQT*MK*S 569
+I+READGSD+LEGF L HSIAGGTGSG+GS++LE L+DR+ + P + S
Sbjct: 121 MIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNS-QSVS 179
Query: 570 DVV 578
DVV
Sbjct: 180 DVV 182
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 147 bits (356), Expect = 1e-36
Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 1/159 (0%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHYIPR 218
E++ +Q GQCGNQ+G FW + EHG+ GI + A +R +V+F +A Y+PR
Sbjct: 3 EIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPR 62
Query: 219 AVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFDII 395
AVL+DLEP + + + + L+ P+N+ + GAGN WA G Y +G +L + V D++
Sbjct: 63 AVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQ--SGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 396 NREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRF 512
REA+ D L+GF L HS+ GGTGSGMG+ +L + + +
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEY 159
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 133 bits (321), Expect = 2e-32
Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILE-EFASAGSDRK-DVFFYQADDDHYI 212
E+I++ +GQ G QIG W+ C+EHGI P G + E AS SD FF + Y+
Sbjct: 3 EIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYV 62
Query: 213 PRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNEEVFD 389
PR++ +DLEP VI + PY L++PE + K A NN+A G Y G++L +EV D
Sbjct: 63 PRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKED--ASNNYARGHYTVGKELVDEVTD 120
Query: 390 IINREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLSDRFS 515
I R AD L+GF++ HS GGTGSG G+ +LE L+ ++
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYT 162
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 120 bits (290), Expect = 1e-28
Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 7/162 (4%)
Frame = +3
Query: 39 EMITLQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAG------SDRKDVFFYQADD 200
E+I++ +GQ G QIG W+ C+EHGI P+G E + +D FF +
Sbjct: 3 EVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSETGQ 62
Query: 201 DHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKHGGGAGNNWASG-YAQGEKLNE 377
++PR++ +DLEP VI + PY L++PE + K A NN+A G Y G+++ +
Sbjct: 63 GKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKED--ASNNYARGHYTVGKEMID 120
Query: 378 EVFDIINREADGSDNLEGFVLCHSIAGGTGSGMGSYILEHLS 503
V + I R AD L+GF++ HS GGTGSG+G+ +LE L+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLN 162
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 28.7 bits (61), Expect = 0.65
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 408 DGSDNLEGFVLCHSIAGGTGSG 473
DG + EGF + +IAGG G+G
Sbjct: 1104 DGENGEEGFAMYETIAGGAGAG 1125
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -3
Query: 246 HAAPDPAELLVVCSDHHQLDRKTHLYDQIP 157
++ P+PAE+ +C+DH + + L+ P
Sbjct: 530 YSTPNPAEVQNICNDHAKFETSKSLHLSSP 559
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 51 LQLGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRK 173
LQ+ Q F W+ C++ G +P+ L+ F + D K
Sbjct: 18 LQICNMDEQTMFYKWESWCLQRGNTPKLDLDTFKAFAKDMK 58
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 120 ISP-EGILEEFASAGSDRKDVFFYQAD 197
ISP EGI+ E A+ D D+F Y D
Sbjct: 1029 ISPVEGIIPEDANVRFDNVDIFLYDCD 1055
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 25.8 bits (54), Expect = 4.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1
Query: 475 WAHIYWNTCLIGFPKKLVQTYSVF 546
W H+ W C++ F ++ Y VF
Sbjct: 59 WRHLNWLHCMLIFGLPMIAIYGVF 82
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 213 PRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLS 311
P A ++ EP + SP+A ++NP NV S
Sbjct: 1588 PSAGSVEREPLFLIAASGSPHAFIWNPHNVSAS 1620
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.6
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +3
Query: 57 LGQCGNQIGFEFWKQLCIEHGISPEGILEEFASAGSDRKDVFFYQADDDHYIPRAVLLDL 236
LG G+ WK++ + ++ G++EEF + +D Y H + R + + L
Sbjct: 958 LGAFGDSSDIRDWKKISSQRRVTQLGVVEEF-DILLELRDKTLYA----HKLSRIIEMGL 1012
Query: 237 EPRVIHTIMNSPYA 278
I ++ +P+A
Sbjct: 1013 IESKIAVVIGTPHA 1026
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 99 QLCIEHGISPEGILEEFASAGSDRKDVFFYQAD 197
QL +E G S G+L + ++ D++F AD
Sbjct: 197 QLVMELGQSKNGVLGTVSKTANEGPDIYFSNAD 229
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 444 HSIAGGTGSGMGSYILEHLSDRF 512
+ + GGT SG+GS L+ L+ RF
Sbjct: 345 NKVEGGTRSGIGSGFLKRLALRF 367
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.0 bits (52), Expect = 8.0
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +1
Query: 157 RDLIVKMCFSIKLMMITTYHEQFCWIWS 240
R L+ +C + + + T+H ++ WI S
Sbjct: 85 RKLLFSLCGHMDYVRVCTFHHEYPWILS 112
>SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 260 NRVYDTRLQIQQNCSWYVVIIISLIEKHIFTIRS 159
N +Y TRL +Q W++ I + L RS
Sbjct: 6 NDLYQTRLDVQTPNRWFLYISLELFNNMYSPFRS 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,808
Number of Sequences: 5004
Number of extensions: 51666
Number of successful extensions: 157
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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