Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0008
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 100 2e-22
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 91 2e-19
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 74 2e-14
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 35 0.011
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 28 0.93
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 26 3.8
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 26 5.0
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 6.6
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 25 8.7
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 25 8.7
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 100 bits (239), Expect = 2e-22
Identities = 60/152 (39%), Positives = 82/152 (53%), Gaps = 5/152 (3%)
Frame = +1
Query: 1 LWRRDGTG-HYLCNACGLYNKMNGMNRPLKQPRRLVRQRHAALAAPPHDMGAKRP--GTM 171
LWRR ++LCNACGLYNK G+ RPL P + G+ + +
Sbjct: 375 LWRRTSDKLNFLCNACGLYNKQYGVMRPLS----------------PRNKGSSKALENLV 418
Query: 172 CTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIKAD 351
C NC +T TSLWR++ G+TVCNACGLY +LH NRP+ +KK+ I TR+R+ K +
Sbjct: 419 CANCSSTKTSLWRKDRHGQTVCNACGLYARLHGHNRPIGLKKNKI-TRRRRGKGPGGEDG 477
Query: 352 RS--AKAVQRAVSAGIKMESILESARRSPPRL 441
S K+ +S + M IL S P+L
Sbjct: 478 MSDEVKSEFPVLSKSVTMAEILSSKGLESPQL 509
Score = 46.0 bits (104), Expect = 4e-06
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 169 MCTNCQTTATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLT 288
+C NC T T LWRR +CNACGLY K + V RPL+
Sbjct: 364 VCFNCGVTETPLWRRTSDKLNFLCNACGLYNKQYGVMRPLS 404
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 90.6 bits (215), Expect = 2e-19
Identities = 60/171 (35%), Positives = 85/171 (49%), Gaps = 3/171 (1%)
Frame = +1
Query: 94 RRLVRQRHAALAAPPHDMGAKRPGTMCTNCQTTATSLWRRNVQGETVCNACGLYFKLHNV 273
RR +H ++PPH+ T C NC TT T LWRR+ G +CNACGLY+K+H V
Sbjct: 151 RRSSHNQHED-SSPPHEPSV----TFCQNCATTNTPLWRRDESGNPICNACGLYYKIHGV 205
Query: 274 NRPLTMKKDSIQTRKRKPKNSNIKADRSAKAVQRAVSAGIKMESILESARRSPPRLGYYV 453
+RP+TMKK I+ RKR N N A+ S ++R +S+G S+ + + R P +
Sbjct: 206 HRPVTMKKAIIKRRKRLVFNGN--ANESQHNLKR-MSSGDSGSSVKQQSTRDGPFSKSFP 262
Query: 454 QS---AEGMKLEEPQHHVMYIGVPELGPHKAAPHHDHSAVSLAS*ASRPTP 597
A G E H M GV L P P ++ + + P+P
Sbjct: 263 NGNGHASGNSGEGLAEHGMNTGV--LPPASTFPSYNSNFTGFLPSSFNPSP 311
Score = 52.0 bits (119), Expect = 7e-08
Identities = 18/38 (47%), Positives = 31/38 (81%)
Frame = +1
Query: 1 LWRRDGTGHYLCNACGLYNKMNGMNRPLKQPRRLVRQR 114
LWRRD +G+ +CNACGLY K++G++RP+ + ++++R
Sbjct: 182 LWRRDESGNPICNACGLYYKIHGVHRPVTMKKAIIKRR 219
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/41 (51%), Positives = 24/41 (58%)
Frame = +1
Query: 163 GTMCTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPL 285
G C+NC T TSLWRR +CNACGLY K RP+
Sbjct: 9 GQSCSNCHKTTTSLWRRGPDNSLLCNACGLYQKHRKHARPV 49
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +1
Query: 1 LWRRDGTGHYLCNACGLYNKMNGMNRPLK 87
LWRR LCNACGLY K RP+K
Sbjct: 22 LWRRGPDNSLLCNACGLYQKHRKHARPVK 50
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 73.7 bits (173), Expect = 2e-14
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Frame = +1
Query: 151 AKRPGTMCTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPLTMKKDSIQTRKR--- 321
A P CTNCQT T LWRR+ G+ +CNACGL+ K++ V RPL++K D I+ R R
Sbjct: 628 ATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACGLFMKINGVVRPLSLKTDVIKKRNRGVG 687
Query: 322 ---KPKNSNIKADRSAKAVQRAVSA 387
PK S + + K+ ++ SA
Sbjct: 688 TSATPKQSGGRKGSTRKSSSKSSSA 712
Score = 51.2 bits (117), Expect = 1e-07
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +1
Query: 1 LWRRDGTGHYLCNACGLYNKMNGMNRPLKQPRRLVRQRHAAL--AAPPHDMGAKRPGTMC 174
LWRR G LCNACGL+ K+NG+ RPL ++++R+ + +A P G ++ T
Sbjct: 645 LWRRSPDGQPLCNACGLFMKINGVVRPLSLKTDVIKKRNRGVGTSATPKQSGGRKGSTRK 704
Query: 175 TNCQTTA 195
++ ++++
Sbjct: 705 SSSKSSS 711
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 34.7 bits (76), Expect = 0.011
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQGET---VCNACGLYFKLHNVNRP--LTMKKDSIQTRKRKPKNS 336
C NC T T+ WR +CNACG+Y+ RP L + +T K ++
Sbjct: 351 CQNCGTIKTANWRNATYMNITLMLCNACGIYWTSRRSMRPRNLWSTYKAFETEKPLENDA 410
Query: 337 NIKADRSAKAVQRAVSAGIKMESILESARRSPP 435
+ + + + + I + LE+A R P
Sbjct: 411 FAQLELAVYKLSQQRKLSISIFRELENAGRHSP 443
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 28.3 bits (60), Expect = 0.93
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 169 MCTNCQTTATSLWRRNVQGETVCNACGL 252
+C+ C+ +L G+TVC +CGL
Sbjct: 19 ICSECREDPPNLVEEFSSGDTVCGSCGL 46
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 199 SLWRRNVQGETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIKADRSAK 363
+L++ GE+ C + G + LT +Q +R+P SN+ R+ K
Sbjct: 6 TLFKVTTYGESHCKSVGCIVEGCPPGMNLTESDVQVQLTRRRPGQSNLTTPRNEK 60
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/22 (40%), Positives = 19/22 (86%)
Frame = +1
Query: 316 KRKPKNSNIKADRSAKAVQRAV 381
K+ KN+N++++R+AKA+++ V
Sbjct: 28 KKYDKNTNLQSNRNAKALEKRV 49
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 243 VRPLLQAAQRQPTSHHEEGLHSD 311
++PLL+A + + HEE LH+D
Sbjct: 277 LKPLLEATEDVLIAQHEEVLHND 299
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 150 RQKTGHDVHQLPDHGDVPVAPQRAGRDGLQRVRPLLQAAQRQPTS 284
+Q G ++ + D+GD+ + QR ++V PLL + +Q S
Sbjct: 339 KQNLGLEIIEEKDNGDLSMWNQRNSAASRKKVVPLLMDSVKQVAS 383
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 217 RCGATGTSPWSGSWCTSCPVFWRPYHVEAQRVRR 116
+CGA G + S C V+W P +E Q + R
Sbjct: 730 KCGALGLNLTCASRVILCDVWWNP-AIEEQAIDR 762
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,178
Number of Sequences: 5004
Number of extensions: 33979
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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