Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0008
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.78 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 322 KPKNS---NIKADRSAKAVQRAVSAGIKMESILESARRSPPRL 441
           KPKNS   NI      K   R ++AGI  +SI  S  R  PR+
Sbjct: 518 KPKNSQDNNISLLEQQKIPLR-MTAGIDPKSIFNSGYRPKPRM 559


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 348 SLNITVLWFPFSRLNGVLLHGERSVDVVQLEVE 250
           S +I V +FPF     VL     + D  QLE+E
Sbjct: 130 SCDIDVEFFPFDEQRCVLKWASWTYDGYQLELE 162


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 529 HKAAPHHDHS 558
           H A PHH HS
Sbjct: 436 HAATPHHQHS 445



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 339 ITVLWFPFSRLNGVLLHGERSVDVVQLEVE 250
           I + WFPF      +  G  + D  QL+++
Sbjct: 150 IDITWFPFDDQRCEMKFGSWTYDGFQLDLQ 179


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 217 RCGATGTSPWSGS 179
           RC ATG   W GS
Sbjct: 363 RCNATGAFSWIGS 375


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 548 WCGAALCGPSSGTPMYMTW 492
           W G  +  PS  TP Y  W
Sbjct: 196 WHGDNMLEPSPKTPWYKGW 214


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 615 NYYDDVWSWS 586
           NYY DV+ W+
Sbjct: 7   NYYGDVYQWN 16


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 346 ADRSAKAVQRAVSAG 390
           ADRSA  V++  SAG
Sbjct: 54  ADRSAPRVKKTASAG 68


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 346 ADRSAKAVQRAVSAG 390
           ADRSA  V++  SAG
Sbjct: 144 ADRSAPRVKKTASAG 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,057
Number of Sequences: 438
Number of extensions: 2855
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)