Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0008
(615 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36620.1 68417.m05197 zinc finger (GATA type) family protein 45 3e-05
At3g50870.1 68416.m05570 zinc finger (GATA type) family protein ... 45 5e-05
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ... 43 2e-04
At2g18380.1 68415.m02141 zinc finger (GATA type) family protein 43 2e-04
At3g06740.1 68416.m00799 zinc finger (GATA type) family protein 42 2e-04
At1g08010.1 68414.m00874 zinc finger (GATA type) family protein ... 42 3e-04
At1g08000.2 68414.m00873 zinc finger (GATA type) family protein ... 42 3e-04
At1g08000.1 68414.m00872 zinc finger (GATA type) family protein ... 42 3e-04
At4g24470.2 68417.m03508 zinc finger (GATA type) protein ZIM (ZI... 42 4e-04
At4g24470.1 68417.m03507 zinc finger (GATA type) protein ZIM (ZI... 42 4e-04
At4g32890.1 68417.m04680 zinc finger (GATA type) family protein ... 41 6e-04
At5g49300.1 68418.m06101 zinc finger (GATA type) family protein ... 40 0.001
At3g45170.1 68416.m04875 zinc finger (GATA type) family protein ... 39 0.002
At5g56860.1 68418.m07095 zinc finger (GATA type) family protein ... 39 0.003
At4g26150.1 68417.m03764 zinc finger (GATA type) family protein ... 39 0.003
At2g45050.1 68415.m05608 zinc finger (GATA type) family protein ... 38 0.007
At3g54810.2 68416.m06066 zinc finger (GATA type) family protein ... 37 0.009
At3g54810.1 68416.m06065 zinc finger (GATA type) family protein ... 37 0.009
At3g16870.1 68416.m02157 zinc finger (GATA type) family protein ... 37 0.012
At5g26930.1 68418.m03211 zinc finger (GATA type) family protein ... 36 0.016
At4g34680.1 68417.m04923 GATA transcription factor 3, putative (... 36 0.016
At3g21175.2 68416.m02676 zinc finger (GATA type) family protein ... 36 0.021
At3g21175.1 68416.m02675 zinc finger (GATA type) family protein ... 36 0.021
At5g66320.2 68418.m08362 zinc finger (GATA type) family protein 36 0.028
At5g66320.1 68418.m08361 zinc finger (GATA type) family protein 36 0.028
At5g25830.1 68418.m03065 zinc finger (GATA type) family protein ... 36 0.028
At3g60530.1 68416.m06770 zinc finger (GATA type) family protein ... 36 0.028
At3g20750.1 68416.m02625 zinc finger (GATA type) family protein 35 0.049
At4g36240.1 68417.m05155 zinc finger (GATA type) family protein ... 34 0.065
At3g24050.1 68416.m03020 GATA transcription factor 1 (GATA-1) id... 34 0.065
At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-proly... 34 0.086
At1g51600.2 68414.m05811 zinc finger (GATA type) family protein ... 33 0.20
At1g51600.1 68414.m05810 zinc finger (GATA type) family protein ... 33 0.20
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro... 32 0.35
At3g51080.1 68416.m05593 zinc finger (GATA type) family protein ... 32 0.35
At1g53560.1 68414.m06078 expressed protein 30 1.1
At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /... 30 1.4
At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloro... 30 1.4
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro... 30 1.4
At3g10330.1 68416.m01239 transcription initiation factor IIB-2 /... 29 3.2
At5g56050.1 68418.m06993 hypothetical protein 28 4.3
At1g45688.2 68414.m05201 expressed protein 28 4.3
At1g45688.1 68414.m05202 expressed protein 28 4.3
At5g42860.1 68418.m05224 expressed protein 28 5.7
At5g39230.1 68418.m04751 transcription initiation factor-related... 27 7.5
At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam... 27 7.5
At1g52370.1 68414.m05910 ribosomal protein L22 family protein s... 27 7.5
>At4g36620.1 68417.m05197 zinc finger (GATA type) family protein
Length = 211
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +1
Query: 139 HDMGAKRPGTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
H++ A+R C NC TT+T LWR +G +++CNACG+ FK
Sbjct: 70 HNLLARR----CANCDTTSTPLWRNGPRGPKSLCNACGIRFK 107
>At3g50870.1 68416.m05570 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 295
Score = 44.8 bits (101), Expect = 5e-05
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
C NC TT+T LWR +G +++CNACG+ FK
Sbjct: 154 CANCDTTSTPLWRNGPRGPKSLCNACGIRFK 184
>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
and genefinder
Length = 315
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
CT+C+TT T WR G +T+CNACG+ F+
Sbjct: 217 CTHCETTTTPQWREGPNGRKTLCNACGIRFR 247
>At2g18380.1 68415.m02141 zinc finger (GATA type) family protein
Length = 207
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
C +C TT+T LWR +G +++CNACG+ FK
Sbjct: 93 CASCDTTSTPLWRNGPKGPKSLCNACGIRFK 123
>At3g06740.1 68416.m00799 zinc finger (GATA type) family protein
Length = 149
Score = 42.3 bits (95), Expect = 2e-04
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIKA 348
C C T+ T LWR G +++CNACG + N + T+ + + +K+K N N K
Sbjct: 43 CAICGTSKTPLWRGGPAGPKSLCNACG----IRNRKKRRTLISNRSEDKKKKSHNRNPKF 98
Query: 349 DRSAKAVQRAVSAGIKME-SILESARRSPPRLGYYVQSA 462
S K + + M+ S E+ RR+ +LG Q+A
Sbjct: 99 GDSLKQRLMELGREVMMQRSTAENQRRN--KLGEEEQAA 135
>At1g08010.1 68414.m00874 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 303
Score = 41.9 bits (94), Expect = 3e-04
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
CT+C+TT T WR G +T+CNACG+ F+
Sbjct: 222 CTHCETTKTPQWREGPSGPKTLCNACGVRFR 252
>At1g08000.2 68414.m00873 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 308
Score = 41.9 bits (94), Expect = 3e-04
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +1
Query: 169 MCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
+CT+C+T T WR+ G +T+CNACG+ FK
Sbjct: 219 ICTHCETITTPQWRQGPSGPKTLCNACGVRFK 250
>At1g08000.1 68414.m00872 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 308
Score = 41.9 bits (94), Expect = 3e-04
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +1
Query: 169 MCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
+CT+C+T T WR+ G +T+CNACG+ FK
Sbjct: 219 ICTHCETITTPQWRQGPSGPKTLCNACGVRFK 250
>At4g24470.2 68417.m03508 zinc finger (GATA type) protein ZIM (ZIM)
identical to zinc-finger protein expressed in
Inflorescence Meristem, ZIM gi:8918533 from [Arabidopsis
thaliana]
Length = 309
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +1
Query: 160 PGTMCTNC--QTTATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPK 330
P CT+C + T + RR G T+CNACGL++ R L+ K + Q KP
Sbjct: 210 PEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEENQLALMKPD 269
Query: 331 NSNIKADRSAKAVQRAVS 384
+ AD + A S
Sbjct: 270 DGGSVADAANNLNTEAAS 287
>At4g24470.1 68417.m03507 zinc finger (GATA type) protein ZIM (ZIM)
identical to zinc-finger protein expressed in
Inflorescence Meristem, ZIM gi:8918533 from [Arabidopsis
thaliana]
Length = 309
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +1
Query: 160 PGTMCTNC--QTTATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPK 330
P CT+C + T + RR G T+CNACGL++ R L+ K + Q KP
Sbjct: 210 PEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEENQLALMKPD 269
Query: 331 NSNIKADRSAKAVQRAVS 384
+ AD + A S
Sbjct: 270 DGGSVADAANNLNTEAAS 287
>At4g32890.1 68417.m04680 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
gb:Y13650
Length = 308
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 79 PLKQPRRLVRQRHAALAAPPHDMGAKRPGTMCTNCQTTATSLWRRNVQG-ETVCNACGLY 255
P K+ RR+ Q A D G G C +C T T WR G +T+CNACG+
Sbjct: 170 PKKKQRRVKEQDFAG--DMDVDCGESGGGRRCLHCATEKTPQWRTGPMGPKTLCNACGVR 227
Query: 256 FK 261
+K
Sbjct: 228 YK 229
>At5g49300.1 68418.m06101 zinc finger (GATA type) family protein
similar to unknown protein (gb|AAF63824.1)
Length = 139
Score = 39.9 bits (89), Expect = 0.001
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIKA 348
C +C T+ T LWR G +++CNACG + N + +D+ + +K N K
Sbjct: 38 CADCGTSKTPLWRGGPVGPKSLCNACG----IRNRKKRRGGTEDNKKLKKSSSGGGNRKF 93
Query: 349 DRSAKAVQRAVSAGIKMESILESARRSPPRLGYYVQSA 462
S K Q + GI+ S +E R+ +LG Q+A
Sbjct: 94 GESLK--QSLMDLGIRKRSTVEKQRQ---KLGEEEQAA 126
>At3g45170.1 68416.m04875 zinc finger (GATA type) family protein
contains GATA-type zinc finger domain,
INTERPRO:IPR000679
Length = 204
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 70 MNRPLKQPRRLVRQRHAALAAPPHDMGAKRPGT--MCTNCQTTATSLWRRNVQGE-TVCN 240
++ P + + RQ+ + +P +K T C++C T T LWR +G T+CN
Sbjct: 81 LHAPKRSGNKRGRQKRLSFKSPSDLFDSKFGITDKSCSHCGTRKTPLWREGPRGAGTLCN 140
Query: 241 ACGLYFK 261
ACG+ ++
Sbjct: 141 ACGMRYR 147
>At5g56860.1 68418.m07095 zinc finger (GATA type) family protein
similar to unknown protein (pir |T04270)
Length = 398
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +1
Query: 169 MCTNCQTTATSLWRRNVQG-ETVCNACGL 252
+C++C TT T LWR +G +++CNACG+
Sbjct: 231 VCSDCNTTKTPLWRSGPRGPKSLCNACGI 259
>At4g26150.1 68417.m03764 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 352
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +1
Query: 169 MCTNCQTTATSLWRRNVQG-ETVCNACGL 252
+C++C TT T LWR +G +++CNACG+
Sbjct: 200 ICSDCNTTKTPLWRSGPRGPKSLCNACGI 228
>At2g45050.1 68415.m05608 zinc finger (GATA type) family protein
identical to cDNA GATA transcription factor 2 GI:2959731
Length = 264
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 112 RHAALAAPPHDMGAKRPGTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
RH + ++ + G R CT+C + T WR G +T+CNACG+ FK
Sbjct: 164 RHQSSSSETTEGGGMR---RCTHCASEKTPQWRTGPLGPKTLCNACGVRFK 211
>At3g54810.2 68416.m06066 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 160 PGTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
P C +C+ T T WR G +T+CNACG+ +K
Sbjct: 227 PLRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYK 261
>At3g54810.1 68416.m06065 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 160 PGTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
P C +C+ T T WR G +T+CNACG+ +K
Sbjct: 227 PLRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYK 261
>At3g16870.1 68416.m02157 zinc finger (GATA type) family protein
contains Pfam profile:PF00320 GATA:GATA zinc finger
Length = 190
Score = 36.7 bits (81), Expect = 0.012
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIKA 348
C +C T T LWR G +++CNACG+ + L M+ + + ++ N+++
Sbjct: 44 CVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKR-QAALGMRSEEKKKNRKSNCNNDLNL 102
Query: 349 D-RSAK 363
D R+AK
Sbjct: 103 DHRNAK 108
>At5g26930.1 68418.m03211 zinc finger (GATA type) family protein
various predicted proteins, Arabidopsis thaliana
Length = 120
Score = 36.3 bits (80), Expect = 0.016
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQG-ETVCNACGL 252
C+ C+TT T +WR G +++CNACG+
Sbjct: 28 CSECKTTKTPMWRGGPTGPKSLCNACGI 55
>At4g34680.1 68417.m04923 GATA transcription factor 3, putative
(GATA-3) identical to GATA-binding transcription factor
GATA-3 [Arabidopsis thaliana] gi|2959734|emb|CAA74001;
identical to cDNA for GATA transcription factor 3
GI:2959733
Length = 269
Score = 36.3 bits (80), Expect = 0.016
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
C++C T T WR G +T+CNACG+ FK
Sbjct: 182 CSHCGTNNTPQWRTGPVGPKTLCNACGVRFK 212
>At3g21175.2 68416.m02676 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 295
Score = 35.9 bits (79), Expect = 0.021
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +1
Query: 154 KRPGTMCTNCQTT--ATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRK 324
++P +C +C T+ +T + RR G T+CNACGL + R L+ K QT +
Sbjct: 211 QKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLS-KVPPPQTPQHL 269
Query: 325 PKNSNIKADRSA 360
N N A+ A
Sbjct: 270 SLNKNEDANLEA 281
>At3g21175.1 68416.m02675 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 297
Score = 35.9 bits (79), Expect = 0.021
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +1
Query: 154 KRPGTMCTNCQTT--ATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRK 324
++P +C +C T+ +T + RR G T+CNACGL + R L+ K QT +
Sbjct: 213 QKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLS-KVPPPQTPQHL 271
Query: 325 PKNSNIKADRSA 360
N N A+ A
Sbjct: 272 SLNKNEDANLEA 283
>At5g66320.2 68418.m08362 zinc finger (GATA type) family protein
Length = 339
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 157 RPGTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
+P C++C T WR G +T+CNACG+ +K
Sbjct: 246 QPQRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYK 281
>At5g66320.1 68418.m08361 zinc finger (GATA type) family protein
Length = 339
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 157 RPGTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
+P C++C T WR G +T+CNACG+ +K
Sbjct: 246 QPQRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYK 281
>At5g25830.1 68418.m03065 zinc finger (GATA type) family protein
GATA transcription factor, Arabidopsis thaliana,
PIR:T05288
Length = 331
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
C +C T T WR G +T+CNACG+ +K
Sbjct: 221 CLHCATDKTPQWRTGPMGPKTLCNACGVRYK 251
>At3g60530.1 68416.m06770 zinc finger (GATA type) family protein
identical to cDNA for GATA transcription factor 4
GI:2959735
Length = 240
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
CT+C + T WR G +T+CNACG+ +K
Sbjct: 160 CTHCASEKTPQWRTGPLGPKTLCNACGVRYK 190
>At3g20750.1 68416.m02625 zinc finger (GATA type) family protein
Length = 208
Score = 34.7 bits (76), Expect = 0.049
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +1
Query: 172 CTN--CQTTATSLWRRNVQG-ETVCNACGLYFK 261
CTN C T +WRR G +++CNACG+ F+
Sbjct: 159 CTNMNCNALNTPMWRRGPLGPKSLCNACGIKFR 191
>At4g36240.1 68417.m05155 zinc finger (GATA type) family protein
NTL1 protein, curled-leaved tobacco, PIR2:S46419
Length = 238
Score = 34.3 bits (75), Expect = 0.065
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
C++C T WR G +T+CNACG+ FK
Sbjct: 166 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFK 196
>At3g24050.1 68416.m03020 GATA transcription factor 1 (GATA-1)
identical to GATA transcription factor 1 (AtGATA-1)
GB:Y13648 [Arabidopsis thaliana]
Length = 274
Score = 34.3 bits (75), Expect = 0.065
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 163 GTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
G C +C T WR G +T+CNACG+ +K
Sbjct: 193 GRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYK 226
>At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-prolyl
cis-trans isomerase family protein identical to Probable
FKBP-type peptidyl-prolyl cis-trans isomerase 2,
chloroplast precursor (Ppiase) (Rotamase)
(SP:O22870)[Arabidopsis thaliana]; contains Pfam
PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
Length = 223
Score = 33.9 bits (74), Expect = 0.086
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 247 GLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIKADRSAKAVQRAVSAGIKMESILESARR 426
GL K N +R + + + +TR++ K SN+ + R A + VS G+ M S+ A
Sbjct: 19 GLTTKNPNSSRYIAARVIASETREQSCKISNLSSRREAMLLVLGVSGGLSMSSLAAYAAG 78
Query: 427 SPP 435
PP
Sbjct: 79 LPP 81
>At1g51600.2 68414.m05811 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 32.7 bits (71), Expect = 0.20
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 172 CTNCQT--TATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNI 342
C +C +T + RR G T+CNACGL + R L+ K S QT + P N N
Sbjct: 223 CRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLS--KASPQTAQNLPLNKNE 280
Query: 343 KAD 351
A+
Sbjct: 281 DAN 283
>At1g51600.1 68414.m05810 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 32.7 bits (71), Expect = 0.20
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 172 CTNCQT--TATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNI 342
C +C +T + RR G T+CNACGL + R L+ K S QT + P N N
Sbjct: 223 CRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLS--KASPQTAQNLPLNKNE 280
Query: 343 KAD 351
A+
Sbjct: 281 DAN 283
>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}
Length = 409
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = -1
Query: 318 FSRLNGVLLHGERSVDVVQLEVEAARVADRLALHVAAPQGRRRGLAVGAHRARSFGAHIM 139
F G+ ++ V E+ AA DR+A +RRG +A A I+
Sbjct: 186 FGEPRGITINENGEEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLDASIL 245
Query: 138 WRRSECGVALTY 103
WR+ +A Y
Sbjct: 246 WRKRVTALASEY 257
>At3g51080.1 68416.m05593 zinc finger (GATA type) family protein
GATA transcription factor 3 - Arabidopsis thaliana,
PIR:T05288
Length = 312
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 261
C +C T WR G +T+CNACG+ +K
Sbjct: 223 CGHCGVQKTPQWRAGPLGAKTLCNACGVRYK 253
>At1g53560.1 68414.m06078 expressed protein
Length = 153
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 484 PQHHVMYIGVPELGPHKAAPHHDHS 558
P HH + IG+P+ P +PHHD S
Sbjct: 34 PSHHPV-IGIPQPSPPPGSPHHDIS 57
>At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /
general transcription factor TFIIB-1 (TFIIB1) identical
to transcription initiation factor IIB-1 (TFIIB1)
SP:P48512 from [Arabidopsis thaliana]
Length = 312
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVN 276
CT+C+ T L + G+T+C+ CGL + H+++
Sbjct: 6 CTDCKKE-TELVVDHSAGDTLCSECGLVLESHSID 39
>At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to
3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102
SP|P29102 from [Brassica napus]
Length = 405
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -1
Query: 258 EVEAARVADRLALHVAAPQGRRRGLAVGAHRARSFGAHIMWRRSECGVALTY 103
EV AA DR+A +RRG +A A I+WR+ +A Y
Sbjct: 202 EVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEASILWRKRVTALASEY 253
>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}; EST gb|F14478 comes from this gene
Length = 404
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 258 EVEAARVADRLALHVAAPQGRRRGLAVGAHRARSFGAHIMWRRSECGVALTY 103
E+ AA DR+A +RRG +A A I+WR+ +A Y
Sbjct: 203 EIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLDASILWRKRVTALASEY 254
>At3g10330.1 68416.m01239 transcription initiation factor IIB-2 /
general transcription factor TFIIB-2 (TFIIB2) identical
to SP|Q9SS44 Transcription initiation factor IIB-2
(General transcription factor TFIIB-2) (AtTFIIB2)
{Arabidopsis thaliana}
Length = 312
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 172 CTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVN 276
C++C+ ++ + G+TVC+ CGL + H+++
Sbjct: 6 CSDCKRHTEVVFDHSA-GDTVCSECGLVLESHSID 39
>At5g56050.1 68418.m06993 hypothetical protein
Length = 283
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 569 SDTAEWSWCGAALC 528
S T W WCGAALC
Sbjct: 94 SRTNPWIWCGAALC 107
>At1g45688.2 68414.m05201 expressed protein
Length = 248
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 415 SARRSPPRLGYYVQSAEGMKLEEPQHHVMYIGVPELGPHKAAPHHDHSAV 564
S RSP R YYVQS + + + P L P +P H HS++
Sbjct: 16 SPARSPRRPVYYVQSPSRDSHDGEKTATSFHSTPVLSP-MGSPPHSHSSM 64
>At1g45688.1 68414.m05202 expressed protein
Length = 342
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 415 SARRSPPRLGYYVQSAEGMKLEEPQHHVMYIGVPELGPHKAAPHHDHSAV 564
S RSP R YYVQS + + + P L P +P H HS++
Sbjct: 16 SPARSPRRPVYYVQSPSRDSHDGEKTATSFHSTPVLSP-MGSPPHSHSSM 64
>At5g42860.1 68418.m05224 expressed protein
Length = 320
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 415 SARRSPPRLGYYVQSAEGMKLEEPQHHVMYIGVPELGPHKAAPHHDHSAVS 567
S RSP R Y+VQS + + + P L +P H HS+ S
Sbjct: 16 SPTRSPRRPAYFVQSPSRDSHDGEKTATSFHSTPVLTSPMGSPPHSHSSSS 66
>At5g39230.1 68418.m04751 transcription initiation factor-related
contains weak similarity to Transcription initiation
factor IIB (General transcription factor TFIIB)
(Swiss-Prot:Q8W0W3) [Oryza sativa]
Length = 119
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +1
Query: 172 CTNCQT-TATSLWRRNVQGETVCNACGLYFKLHNV----NRPLTMKKDSIQTRKRKPKNS 336
C +C+ T T + R+ G+T+C CGL H + +R ++ SI+T+ + N
Sbjct: 6 CLDCKKRTDTVIDYRS--GDTICTECGLILDSHYIVDSFDRNISYMTPSIRTKHKVGTNV 63
Query: 337 NIK 345
IK
Sbjct: 64 LIK 66
>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
protein similar to iturin A synthetase C [Bacillus
subtilis] GI:16040972; contains Pfam profile PF00501:
AMP-binding enzyme
Length = 1040
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 355 SAKAVQRAVSAGIKMESILESARRSPPRLGYYVQSAEGMKLEEPQHH 495
S A + S GI M I + RSP RL Y+ EG E+ QH+
Sbjct: 524 SLAAAHLSHSLGIDMRLIYQF--RSPSRLLIYLSEKEGKLREDMQHN 568
>At1g52370.1 68414.m05910 ribosomal protein L22 family protein
similar to GB:Z67753 from [Odontella sinensis]
Length = 269
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/78 (17%), Positives = 36/78 (46%)
Frame = +1
Query: 250 LYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIKADRSAKAVQRAVSAGIKMESILESARRS 429
LY+ L + + + + + P +S + Q+ + K++++L+S ++S
Sbjct: 57 LYYHLQQLGISTSRQLQAGEEPVSSPLSSPALLGSGKEEEQKIIPKRQKVQAVLKSIKQS 116
Query: 430 PPRLGYYVQSAEGMKLEE 483
P ++ GM++E+
Sbjct: 117 PKKVNLVAALVRGMRVED 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,054,059
Number of Sequences: 28952
Number of extensions: 203752
Number of successful extensions: 802
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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