Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0007
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   0.98 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   3.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   3.9  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 144 TPHTTLTHSCRTRLYTLPATSTHGR 218
           T HTT +H+ R    T PA+S  G+
Sbjct: 280 TRHTTTSHNTRGTPRTTPASSRCGQ 304


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +1

Query: 175 GLAYIHSQQLVHMDVKPGNIFIC 243
           G+ ++   ++VH D+   N+ +C
Sbjct: 604 GMEHLAKTRVVHRDLAARNVLVC 626


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 394 YLKTDKNGTITGTENYQI 447
           Y++TD +G   G E YQI
Sbjct: 602 YVQTDSSGYGLGAELYQI 619


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,198
Number of Sequences: 336
Number of extensions: 2174
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)