Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0006
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 30 0.41
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 29 0.71
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 29 0.94
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 29 0.94
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 1.2
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 28 1.6
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 28 1.6
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc... 27 2.2
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.8
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit... 26 5.0
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 26 5.0
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 5.0
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 5.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.0
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 6.6
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 26 6.6
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 26 6.6
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 26 6.6
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 8.8
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 8.8
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 25 8.8
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 8.8
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 29.9 bits (64), Expect = 0.41
Identities = 23/124 (18%), Positives = 54/124 (43%)
Frame = +2
Query: 350 QSLRIDEGIPVDEVVKIKVETPKEIKQEDIEAEENYHYSDDSDDVYLTNLKAKKNDIDVI 529
+SL D + + K VE PK+++++ + E + Y ++ ++K KND
Sbjct: 835 ESLAPDFALHENTQQKSPVEKPKKLRKDRYASVEEFDYFSSTEHASKRSVKRFKNDF--- 891
Query: 530 RLKNREKHEVKSNGMKKNSCGNKSELMEDWSMILKQFPEGPYNLVDETDVPVKQEVKDEN 709
+ ++ +++ + + G + L++ W + K FP + + ++Q K +
Sbjct: 892 -TSDEDETLIRAVVITQIYYGGTNRLIK-WEAVQKCFPNRDIYALTRRYLSIRQHTKFKG 949
Query: 710 SADF 721
F
Sbjct: 950 LQQF 953
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.71
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Frame = +2
Query: 194 RKVNEFYEFCNET--IVVENKLQAFLKQQG-----THNTTVDLILGKPKTPILPPKTCEQ 352
R+ +EFY N+ IV + L+ Q NT L G+P P+ ++
Sbjct: 566 RRASEFYILFNQVSDIVNTSDTMEVLELQKKPPYIVQNTMYKLFFGEPLNPVAVK--AQR 623
Query: 353 SLRIDEGIPVDEVVKIKVETPKEIKQEDIEAEEN 454
+ DE + ++ + +E PKE+ + I+++++
Sbjct: 624 KVMPDENLDLNCPINGVIEVPKELLENIIQSDDS 657
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 28.7 bits (61), Expect = 0.94
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = +2
Query: 479 DVYLTNLKAKKNDIDVIRLKNREKHEVKSNGMKKNSCGNKSELMEDWSMILKQFPEGPYN 658
D + N+KA NDI+ I L + E +++ MK +C K ++D + F +
Sbjct: 73 DSHYGNIKASVNDIEPIVLPDEELCQLRLTNMKLWNC--KLPSLKDEAEFYSLFSK---K 127
Query: 659 LVDETDV 679
+V+ETD+
Sbjct: 128 IVEETDL 134
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 28.7 bits (61), Expect = 0.94
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +2
Query: 317 KTPILPPKTCEQSLRIDEGIPVDEVVKIK-VETPKEIKQEDIEAEENYHYSDDSDDVYLT 493
K+PI P+T +++ ++E ++ +K VET ++E + Y+ L
Sbjct: 141 KSPIPSPETIHKNIDVEEKETIEPTTPVKEVETTAHAEEEKGPLTPDSEYAARQLTEELA 200
Query: 494 NLKAKKNDID-VIRLKNREKHEVKSNGMKKN 583
N +++ +D +R+ + E + +G ++N
Sbjct: 201 NKSSQEEGVDKQLRVVEATEKEHEEDGNEEN 231
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 323 PILPPKTCEQSLRIDEGIP-VDEVVKIKVETPKEIKQEDIE 442
P PP T + L I++ +P VDEV ++ K + + D+E
Sbjct: 261 PTAPPVTVAEVLEIEDKVPKVDEVEEVHSPEAK-VTENDVE 300
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 579 FFIPLLFTSCFSLFFNLITSISFFF 505
FF LF+S SLFF L SFFF
Sbjct: 5 FFFASLFSSFESLFFRLFFVCSFFF 29
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 440 EAEENYHYSDDSDDVYLTN-LKAKKNDIDVIRLKNREKHEVKSN 568
++ E+Y+ +DD +D TN +K N D R NR K E N
Sbjct: 1249 QSTEDYYCADDGNDKSATNFVKLAVNKADPGRESNRRKLESDKN 1292
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 386 EVVKIKVETPKEIKQEDIE-AEENYHYSDDSDDVYLTNLKAKKNDIDVIRLKNREKHEVK 562
E ++ V++ E++ + E AE N + + D+ KK+ + R K+
Sbjct: 91 EAIEKPVQSTTEVELKTNELAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSA 150
Query: 563 SNGMKKNSCGNKSELMEDWSMILKQ 637
+KKN + ++WS +K+
Sbjct: 151 QKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPBC3B9.06c |apg3||autophagy associated protein Apg3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 275
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 434 DIEAEENYHYSDDSDDVYLTNLKAKKNDI-DVIRLKNREKHEVKSNG 571
DIE ++ + DD DD ++++ + +DI RLK + K E+ +G
Sbjct: 91 DIETDDTRNKDDDQDDDAISSIHSDTSDIASAERLKGQSK-ELSDSG 136
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -1
Query: 624 IDQSSISSDLFPHEFFFIPLLFTSCFSLFFNLITSISF 511
I S+S+ FPH F F+ L F ++S ++
Sbjct: 21 ISSISLSNSFFPHSFMFVKSLHLMTSQHIFKCLSSCNY 58
>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 368 EGIPVDEVVKIKVETPKEIKQEDIEAEENYHYSDDSDDVYLTNLKAKKNDIDVIRLKNRE 547
+G P +E++ P E E E E H +++DD++L K+ + + RE
Sbjct: 72 QGPPTEELI-----IPPEEMLETKEEESLKHAREENDDLHLDKETKKRLKKEKKKAARRE 126
Query: 548 KHEVK 562
K E +
Sbjct: 127 KEEAR 131
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 656 NLVDETDVPVKQEVKDENSADFDDLPNLKDKY 751
N++ + D P K + DE+ + D +KD+Y
Sbjct: 272 NIISQKDNPPKSDSDDEDDYEKLDAKTMKDRY 303
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 335 PKTCEQSLRIDEGIPVDEVVKIKVETPKEIKQ 430
P T E + D + +DEV KI E ++I+Q
Sbjct: 455 PSTLESDIAEDAALQIDEVRKISDEEVEKIQQ 486
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 647 GPYNLVDETDVPVKQEVKDENSADFDDLPNLKDKY 751
GPY+ +E K + K+EN + +LP D Y
Sbjct: 333 GPYSQEEEETSLFKSQRKEENEEESKELPEDSDIY 367
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 5.0
Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Frame = +2
Query: 170 QKICDHCSRKVNEFYEFCNETIVVENKLQAFLKQQGTHNTTVDLILGKPKTPILPPKTCE 349
++I D C + V E +E + KL + ++ + + +L LG KT L PK E
Sbjct: 432 KEITDFCQKGVEES---ASEEEAINWKLLMAVSKRASRSKFAEL-LGY-KT--LKPKNDE 484
Query: 350 QSLRIDEGIPVDEVVKIKVETPKEIKQEDIEAEENYH--YSDDSDDVYLTNLKAKKNDID 523
++DE + D E K E+ + + +++ ++ +V + + K + D
Sbjct: 485 DDSKVDESVAKDSTT--PNELSKNANNENYDDDSSFYGKLAESVQEVSIADKKDAEIVKD 542
Query: 524 VIRLKNREKHEVKSN 568
++ N E +++ N
Sbjct: 543 SFKIFNPEDSDLEKN 557
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 623 STNLPSAQTCFRMNFS-SYHYFLLRVSLCFLILLH 522
S++L AQ + MN S SY Y LR S C ++ LH
Sbjct: 257 SSSLCDAQELYIMNPSNSYTYANLRFSDCSILQLH 291
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 341 TCEQSLRIDEGIPVDEVVKIKVETPKEIKQEDIEAEENYHYSDDSDDV-YLTNLKAKKND 517
T + S+R P D + +++ P Q + YS D+V Y +AKKN
Sbjct: 618 TFDVSMRFLHECPWDRLRRLRKLVPNIPFQMLLRGANGLCYSSLPDNVIYFFCEQAKKNG 677
Query: 518 IDVIRL 535
ID+ R+
Sbjct: 678 IDIFRV 683
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 641 PEGPYNLVDETDVPVKQEVKDENSADFDDLPNLKDK 748
P P + T++ +KQ++++EN +D KD+
Sbjct: 190 PPAPQDESQGTEINLKQKIEEENDEILEDSKESKDE 225
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 569 HYFLLRVSLCFLILLHQYRFSLLLDLL 489
+YF L + L FL++ Y F+L+L LL
Sbjct: 12 NYFPLVLRLFFLVVFGLYSFTLILHLL 38
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +3
Query: 270 SKEHTTQL*ISYLENRKHQFYLLKHVNKVFELMKVYQ 380
+KE+ + + +LEN +H+ +L ++ +L +V+Q
Sbjct: 222 NKEYARNVLLQFLENHEHRDKILPILSTALDLEEVHQ 258
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.4 bits (53), Expect = 8.8
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Frame = +2
Query: 377 PVDEVVKIKVETPKEIKQEDIEAEENYHYSDDSDDVYLTNLKAKKNDIDVIRLKNREKHE 556
PV+ + TP IK + +++ SDD + ++ + D D L N E+
Sbjct: 371 PVNYSINSAKSTPASIKVNEEILVADHNVSDDILMEEIDDVGITEADFDYFDLPNVEE-- 428
Query: 557 VKSNGMKKNSCGNKSEL-MEDWSMILKQFPEGPYNLVDETDVPVKQEVKDENSADFDDL 730
K ++ N + L E+ + + Q P NL ++P + E++ ++ +DL
Sbjct: 429 -KVEMIEPNFANTMTTLDNEEINTSISQSNTSP-NLNTHENIPKQMEIQSDDRMVTEDL 485
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +2
Query: 380 VDEVVKIK--VETPKEIKQEDIE--AEENYHY-SDDSDDVYLTNLKAKK 511
VDEV++ V TP+ +++ I+ A ++ Y SDDS D+YL K K
Sbjct: 159 VDEVLENAPWVITPEFLEEHKIDFVAHDDIPYASDDSGDIYLPVKKVGK 207
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 376 YTFINSKTLFTCFRR*NWCFRFSKY 302
Y F N +TL T F N+C F +
Sbjct: 439 YEFFNDRTLCTVFSAPNYCGEFDNW 463
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,184
Number of Sequences: 5004
Number of extensions: 56178
Number of successful extensions: 245
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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