Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0006
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.4  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 593 FRMNFSSYHYFLLRVSLCFLILLHQYRFSLLLDLLNRHHHCHLSSD 456
           F +N + Y  F+L  SL F  +  ++ F L   +LNR++   LS+D
Sbjct: 233 FMLNHN-YPPFMLSNSLNFPQIRGEFYFFLHKQVLNRYYLERLSND 277


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 593 FRMNFSSYHYFLLRVSLCFLILLHQYRFSLLLDLLNRHHHCHLSSD 456
           F +N + Y  F+L  SL F  +  ++ F L   +LNR++   LS+D
Sbjct: 233 FMLNHN-YPPFMLSNSLNFPQIRGEFYFFLHKQVLNRYYLERLSND 277


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 554 RVSLCFLILLHQYRFSLLL 498
           +++LC  ILL Q  F LL+
Sbjct: 266 KIALCINILLSQTMFFLLI 284


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +2

Query: 107 NAWYLKMALLPVKIDKNDRLPQKICDHCSRKV 202
           + W L   + P K+D    L Q+  + C + +
Sbjct: 125 DGWELNGEVFPSKMDHQLPLKQRSSEFCGKNI 156


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -1

Query: 327 IGVFGFPSMRSTVVLCVPCCFKKACSLFSTTIVSLQN 217
           IG FG  ++ +  V  +P C  KA +     + ++ +
Sbjct: 296 IGAFGNKALLTPGVTMIPACTCKAVACLDPYVYAISH 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,982
Number of Sequences: 438
Number of extensions: 3904
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)