Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0004
         (537 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D57105 Cluster: PREDICTED: similar to HECT, C2 a...    42   0.007
UniRef50_A0BJX4 Cluster: Chromosome undetermined scaffold_111, w...    34   1.8  
UniRef50_Q4S336 Cluster: Chromosome 3 SCAF14756, whole genome sh...    32   9.6  
UniRef50_A6G8I3 Cluster: Putative uncharacterized protein; n=1; ...    32   9.6  
UniRef50_A3UKF4 Cluster: Sensor histidine kinase; n=1; Oceanicau...    32   9.6  

>UniRef50_UPI0000D57105 Cluster: PREDICTED: similar to HECT, C2 and
           WW domain containing E3 ubiquitin protein ligase 2; n=1;
           Tribolium castaneum|Rep: PREDICTED: similar to HECT, C2
           and WW domain containing E3 ubiquitin protein ligase 2 -
           Tribolium castaneum
          Length = 1285

 Score = 42.3 bits (95), Expect = 0.007
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
 Frame = +1

Query: 235 ETSEPVSVVGRVPASGCASGDIM--WLLNEPNQPYEDCEQLLCFRYYNGEGEECTAESST 408
           ++S     + R   SG  S  +   W L+ P  P+ DCE+LLCFRYY+G   +  A++ +
Sbjct: 95  DSSSAEECLARQKVSGQESSTMWLHWHLDIP--PHNDCEKLLCFRYYDGSTLDYLAQTDS 152

Query: 409 LPPRFKVDLKNLPNRLKEGMCRKRSGDQVSAF 504
           L  +   D   L   +K     K +G + +AF
Sbjct: 153 LIIKHPTD--KLKKLIKVKQKHKCNGIENNAF 182


>UniRef50_A0BJX4 Cluster: Chromosome undetermined scaffold_111,
           whole genome shotgun sequence; n=7; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_111,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 3035

 Score = 34.3 bits (75), Expect = 1.8
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 304 WLLNEPNQPYEDCEQLLCFRYYNGEGEECT-AESSTLPPRFKVDLK 438
           W+++  +  + DC   L F  YN  G   T ++  TLPP FK++L+
Sbjct: 40  WVVSGASPQFTDCMGTLLFVGYNAFGSRTTVSKIFTLPPHFKINLQ 85


>UniRef50_Q4S336 Cluster: Chromosome 3 SCAF14756, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 3 SCAF14756, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 1415

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 277 SGCASGDIMWLLNEPNQPYEDCEQLLCFRYYNG 375
           +G   G I+W L EP   + + E  +CF+YY+G
Sbjct: 128 NGTQRGQIVWRL-EPGPYFMESETKICFKYYHG 159


>UniRef50_A6G8I3 Cluster: Putative uncharacterized protein; n=1;
            Plesiocystis pacifica SIR-1|Rep: Putative uncharacterized
            protein - Plesiocystis pacifica SIR-1
          Length = 2286

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +1

Query: 223  SDVYETSEPVSVVGRVPASGCASGDIMWLLNEPNQPYEDCEQLLCFRYYNGEGEECTAES 402
            +DV   +  +++VGR+PA G A+  +  L   P +P E  E     R       E    +
Sbjct: 1382 TDVVVVNRAIAIVGRLPAPGEAATRLEQLARSPGRPEEKIEDAARARLLL-IAAELHLRN 1440

Query: 403  STLPP 417
             TLPP
Sbjct: 1441 DTLPP 1445


>UniRef50_A3UKF4 Cluster: Sensor histidine kinase; n=1; Oceanicaulis
           alexandrii HTCC2633|Rep: Sensor histidine kinase -
           Oceanicaulis alexandrii HTCC2633
          Length = 631

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +2

Query: 65  LKSVLFSRLLKTNCVNF*VF-VFPWIHLQGRLGEIW-PSNQRKSLSVKAAHW*TPLTYTR 238
           L +  F+RL+    +    F +   + LQ + G  W P++ R   ++    W + LT   
Sbjct: 12  LAATPFTRLIVLTALGLAAFALLSLLSLQPQTGWSWSPADWRNPFTIDPGIWSSLLTGLV 71

Query: 239 RRSRSAWSGACRPADVPAA 295
               SAW  A +PA +PA+
Sbjct: 72  AYLLSAWVWALKPASLPAS 90


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 498,914,884
Number of Sequences: 1657284
Number of extensions: 9730347
Number of successful extensions: 27779
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27769
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)