Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0004
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 27 1.8
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 27 2.3
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 3.1
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces... 26 3.1
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 4.1
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 26 4.1
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 25 5.4
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 7.2
SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom... 25 7.2
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr... 25 7.2
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 7.2
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 25 7.2
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.5
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 25 9.5
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 25 9.5
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 359 SGTTMVRAKNARRSHQHCRRVLKLTSRIY 445
SG V +KNAR +H RR+ K TS +Y
Sbjct: 269 SGKLSVLSKNARLTHWVERRIGKSTSLVY 297
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 531 HLKALIVIAEGRDLVPASFSAHA 463
+L ++V + D PASFSAHA
Sbjct: 154 YLTGIVVTSRVTDATPASFSAHA 176
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 473 LHMPSLSRFGRFLRSTLKRGGSVDDSAVHSSPSPL*YR 360
LH PS R + L + ++D ++H+SP P+ Y+
Sbjct: 619 LHHPSTKRSHKMLEGK-ELSQELEDLSLHNSPDPIIYK 655
>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +1
Query: 343 EQLLCFRYYNGEGEECTAESSTLPPRFKVDLKNLPNRLKEGMCRKRSGDQVSA 501
++++ F + + +E + S +K ++N+P+RL+ + RKRS + A
Sbjct: 39 KEIVAFAQKHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLSRKRSDEDDKA 91
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Frame = -2
Query: 473 LHMPSLSRFGRFLRSTL--KRGGSVDDS 396
L++P+LSRFG+ + ++L + G S DD+
Sbjct: 5 LNIPALSRFGKSISASLHHQNGSSRDDN 32
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 128 FPWIHLQGRLGEIWPSNQRKSLSVKAAH 211
FPW L +WPS + L +K AH
Sbjct: 310 FPWTRLDPYYNGVWPSIDERPL-LKTAH 336
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 233 YTSEVSTNVLLSQRGISSDLMAKFHLNVPVNV 138
Y SEV+ N+L++ + + + LN P N+
Sbjct: 234 YCSEVTGNLLINVMHVDEQYVKRLKLNQPYNI 265
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 23 GFSFIFDVFKFDIVLKSVLFSRLLKTN 103
G+S + + FD VL S++FS+L N
Sbjct: 678 GYSATYYSYIFDTVLASLIFSKLFAGN 704
>SPBC13G1.12 |did2||vacuolar sorting protein
Did2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 178
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 374 VRAKNARRSHQHCRRVLKLTSRIYRIDSK 460
+ A NA R Q +LKL+SRI + S+
Sbjct: 28 IYASNAIRKQQESLNLLKLSSRIDAVSSR 56
>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 179
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 409 LPPRFKVDLK-NLPNRLKEGMCRKRSGD--QVSAFCYNNE 519
LPPRF VD+K E K+ D +V+A C N +
Sbjct: 127 LPPRFHVDVKVKKGTHASESQVNKQLNDKERVAAACENEQ 166
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -2
Query: 266 RPTTLTGSDVSYTSEVSTN--VLLSQR--GISSDL 174
RP+TL SD+ YT + N VL ++R + SDL
Sbjct: 697 RPSTLFSSDIEYTPTIQLNRQVLKTRRTYNLFSDL 731
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 7.2
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +1
Query: 226 DVYETSEPVSVVGRVPASGCASGDIMWLLNEPNQPYEDCEQLLCFRYYNGEGEECTAESS 405
D +TS VV VPA G I++ P Y CE Y+ EC + S
Sbjct: 154 DAEDTSSDPVVVVNVPA-GYGPRHIVFHKTLP-VCYLICELANRILVYDTNTFECLQDVS 211
Query: 406 TLPPRFKVD 432
TLPP ++
Sbjct: 212 TLPPSMTLE 220
>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 249
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 325 QPYEDCEQLLCFRYYNGEGEECTAESSTLPPRFKVDLKNLPNRLKE 462
QP+ C Q+LCF +G ++ L K L N+P++ E
Sbjct: 152 QPFFSCSQILCFS-REVDGTTTDDQAQYLEKIKKSLLPNIPSQWSE 196
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 440 FLRSTLKRGGSVDDSAVHSSP 378
F+ ST KRG S +VHS P
Sbjct: 55 FISSTSKRGRSTKAGSVHSVP 75
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 290 LAHPLAGTRPTTLTGSDVSYTSEVST 213
+ PLAGT TT+ V Y + ++T
Sbjct: 141 VVEPLAGTVTTTIHSGSVEYNTTLAT 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,163
Number of Sequences: 5004
Number of extensions: 39731
Number of successful extensions: 140
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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