Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0004
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1080 + 23815232-23817040                                         30   1.3  
02_05_0399 + 28658667-28658922,28659287-28659443,28659527-286597...    30   1.3  
06_01_0019 + 208204-208533,208642-208844,208969-209107                 29   1.8  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    28   4.1  
03_04_0174 - 18044516-18046327                                         28   4.1  
11_06_0478 + 24073295-24074172,24074790-24075090                       27   9.5  
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923...    27   9.5  

>07_03_1080 + 23815232-23817040
          Length = 602

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 298 IMWLLNEPNQPYEDCEQLLCFRYYNGEGEECTA 396
           +MW+LNE   PY D EQ L   +  G     TA
Sbjct: 214 LMWMLNELASPYGDVEQKLASYFLQGLFARLTA 246


>02_05_0399 +
           28658667-28658922,28659287-28659443,28659527-28659746,
           28660549-28660602,28660671-28660750,28661269-28661351,
           28661385-28661546,28661667-28662071,28662151-28662503,
           28662590-28662835,28663158-28663481,28664110-28664154
          Length = 794

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/70 (24%), Positives = 28/70 (40%)
 Frame = +2

Query: 278 ADVPAAT*CGFLMSPISLMKIANNCYASGTTMVRAKNARRSHQHCRRVLKLTSRIYRIDS 457
           AD+ A   CG       +  I  NC      +   +  RR    C RV+ +   I+ +++
Sbjct: 439 ADIDATVLCGICRRDCYVAHIMCNCRIDAICLCHEEEIRRCPCSCDRVVFVRKDIFELET 498

Query: 458 KRACAENEAG 487
                E E+G
Sbjct: 499 LSKKFEEESG 508


>06_01_0019 + 208204-208533,208642-208844,208969-209107
          Length = 223

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 418 AAAVLMTPPCILRPHHCSTGSITVVRNLHKAD 323
           AA + M PP +   HH +T  I ++RN+HK +
Sbjct: 141 AAPMAMPPPPL--QHHTTTSLIMMIRNIHKRE 170


>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
            25541673-25541751,25542151-25542238,25542330-25542600,
            25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 221  VSTNVLLSQRGISSDLMAKFHLNVPVNVSRGTQILKN*HNL 99
            V+ N L + R  SSDL      N  V VS+G Q+++N  N+
Sbjct: 1768 VTGNQLRNSRQSSSDLRKPSTCNEYVRVSKGNQLVRNPKNV 1808


>03_04_0174 - 18044516-18046327
          Length = 603

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 298 IMWLLNEPNQPYEDCEQLLCFRYYNG 375
           +MW+LNE   PY D +Q L   +  G
Sbjct: 210 LMWMLNELASPYGDVDQKLASYFLQG 235


>11_06_0478 + 24073295-24074172,24074790-24075090
          Length = 392

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 319 PNQPYEDCEQLLCFRYYNGEGEECTAESSTLPPRFKVD 432
           P  PYE  +QL C   +  E +  +AE    PP +K+D
Sbjct: 198 PPSPYEWDQQLFCLMCWQVEYQYLSAEWP--PPSYKID 233


>06_02_0041 +
           10889741-10890092,10890161-10890235,10891139-10892341,
           10892970-10893253,10893343-10893459,10894126-10894388,
           10894557-10894725,10894838-10895110,10895674-10895718,
           10896472-10896591,10896926-10896987,10897296-10897318,
           10897911-10898128
          Length = 1067

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -2

Query: 236 SYTSEVSTNVLLSQRGISSDLMAKFHLNVPVNVSRGTQILKN 111
           S  SE+S   +  +  ++    +K HL + +N SRGT+++K+
Sbjct: 585 SNLSELSDIWIPLKGKLAQACQSKLHLRIILNNSRGTEVMKD 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,683,063
Number of Sequences: 37544
Number of extensions: 274962
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)