Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0004
         (537 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    28   0.23 
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    24   3.7  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   8.6  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 27.9 bits (59), Expect = 0.23
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 368 TMVRAKNARRSHQHCRRVLKLTSRIYRIDSKRACAENEAGTKSR 499
           T+ +A+ A  +HQ    + KL   +  ++ KRA  ENE   +S+
Sbjct: 328 TLEQARRADEAHQ--ADIKKLVDELQEVEVKRAAFENEVAGESK 369


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 481 SGDQVSAFCYNNESF 525
           +GDQVS   YNN++F
Sbjct: 175 NGDQVSLALYNNKNF 189


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 355 CFRYYNGEGEECTAESSTLPPRFKVDLKNLPNRLKEGMCRKRSGDQVSAFC 507
           C   Y+G+  EC+A  S L P   VD   + N  +E  C  R G  V   C
Sbjct: 525 CDGTYHGQRCECSAMESLLEPGM-VDACRMSNASEE--CSGR-GQCVCGVC 571


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 526,320
Number of Sequences: 2352
Number of extensions: 11031
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49897362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)