Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0004
(537 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88176-3|AAB42284.1| 210|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z78062-2|CAB01499.2| 689|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical pr... 28 4.9
U41532-7|ABD63237.1| 769|Caenorhabditis elegans Hypothetical pr... 28 4.9
U41532-6|AAF99908.2| 812|Caenorhabditis elegans Hypothetical pr... 28 4.9
AF125951-3|AAY86273.1| 244|Caenorhabditis elegans Hypothetical ... 28 4.9
Z75538-2|CAA99840.1| 476|Caenorhabditis elegans Hypothetical pr... 27 6.5
>U88176-3|AAB42284.1| 210|Caenorhabditis elegans Hypothetical
protein F18F11.1 protein.
Length = 210
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 59 IVLKSVLFSRLLKTNCVNF*VFVFPWIHLQGRLGEI 166
I+ K + RL KT+ +N FVF + LQG L EI
Sbjct: 63 ILQKLLTIFRLTKTHALNLGKFVFSYKFLQGALSEI 98
>Z78062-2|CAB01499.2| 689|Caenorhabditis elegans Hypothetical
protein F16D3.2 protein.
Length = 689
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 139 TFTGTFR*NLAIKSEEIPLCESSTLVDTSDVYETSEPVSVVGRVPAS 279
TF G +R K+E + + + +T+ D + Y+TS + VPA+
Sbjct: 459 TFEGEYRYASGSKTEVLKISKITTVGDAPEFYQTSFEHKIFENVPAN 505
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 392 RRSHQHCRRVLKLTSRIYRIDSKRACAENE 481
RR QHC +++ I+ +S R C E++
Sbjct: 1583 RRQRQHCDGIVQTVVEIFYFESPRRCREDQ 1612
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 392 RRSHQHCRRVLKLTSRIYRIDSKRACAENE 481
RR QHC +++ I+ +S R C E++
Sbjct: 1580 RRQRQHCDGIVQTVVEIFYFESPRRCREDQ 1609
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 392 RRSHQHCRRVLKLTSRIYRIDSKRACAENE 481
RR QHC +++ I+ +S R C E++
Sbjct: 1583 RRQRQHCDGIVQTVVEIFYFESPRRCREDQ 1612
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 392 RRSHQHCRRVLKLTSRIYRIDSKRACAENE 481
RR QHC +++ I+ +S R C E++
Sbjct: 1580 RRQRQHCDGIVQTVVEIFYFESPRRCREDQ 1609
>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
protein F57C7.4 protein.
Length = 1484
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 308 FLMSPISLMKIANNCYASGTTMVRAKNA 391
FL+ KI N CY+SGT+ +R + A
Sbjct: 14 FLILGFCECKILNQCYSSGTSCIRFEKA 41
>Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical
protein F10B5.3 protein.
Length = 471
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 376 EGEECTAESSTLPPRFKVDLKNLPNRLKEGMCRKR 480
EG A S++ PP ++ K +PN KEG CR +
Sbjct: 212 EGSSPRANSTSTPPTTDLE-KIVPNDDKEGWCRNK 245
>U41532-7|ABD63237.1| 769|Caenorhabditis elegans Hypothetical
protein F11D5.1c protein.
Length = 769
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 138 IQGNTNT*KLTQFVFNSLENNTDLSTMSNLKTSKINENPAHA 13
+ NTN T + N+ NN +++ +LK + + P HA
Sbjct: 238 VSSNTNVTTTTTTINNNNNNNIHINSSYSLKATTLPPTPTHA 279
>U41532-6|AAF99908.2| 812|Caenorhabditis elegans Hypothetical
protein F11D5.1a protein.
Length = 812
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 138 IQGNTNT*KLTQFVFNSLENNTDLSTMSNLKTSKINENPAHA 13
+ NTN T + N+ NN +++ +LK + + P HA
Sbjct: 281 VSSNTNVTTTTTTINNNNNNNIHINSSYSLKATTLPPTPTHA 322
>AF125951-3|AAY86273.1| 244|Caenorhabditis elegans Hypothetical
protein D2063.4 protein.
Length = 244
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +1
Query: 355 CFRYYNGEGEECTAESSTLPPRFKVDLKNLPNRLKEGMCRKRSGDQV 495
CF +G C+ S L R +D+K L LKE C +GD V
Sbjct: 49 CFSAVDGFRNVCSG--SDLSVRSNLDVKQLSELLKEDPCTHVAGDVV 93
>Z75538-2|CAA99840.1| 476|Caenorhabditis elegans Hypothetical
protein F20G4.2 protein.
Length = 476
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = +1
Query: 175 KSEEIPLCESSTLVDTSDVYETSEPVSVVGRVPASGCASGDIMWLLNEPNQPYEDCEQLL 354
KS+ + S + S++++T P+ + P S D + +ED + +
Sbjct: 172 KSDSSDSEQKSDTSEVSNIFDTFSPIKTIDS-PQKTKFSLDFITGYEAQFTAFEDTQPPI 230
Query: 355 CFRYYNGE 378
CF Y NG+
Sbjct: 231 CFDYCNGK 238
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,517,854
Number of Sequences: 27780
Number of extensions: 232461
Number of successful extensions: 662
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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