Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0004
         (537 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37650.1 68417.m05325 short-root transcription factor (SHR)         30   1.1  
At2g43260.1 68415.m05377 F-box family protein / S locus-related ...    29   2.6  
At4g34890.1 68417.m04948 xanthine dehydrogenase, putative simila...    28   4.5  
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa...    28   4.5  
At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase, p...    27   6.0  
At1g28320.1 68414.m03475 protease-related similar to Protease de...    27   6.0  
At3g10420.2 68416.m01250 sporulation protein-related similar to ...    27   7.9  
At3g10420.1 68416.m01249 sporulation protein-related similar to ...    27   7.9  
At1g51830.1 68414.m05843 leucine-rich repeat protein kinase, put...    27   7.9  

>At4g37650.1 68417.m05325 short-root transcription factor (SHR) 
          Length = 531

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
 Frame = +1

Query: 298 IMWLLNEPNQPYEDCEQLLC-------FRYYNGEGEEC 390
           I+W LNE + PY D EQ L        F    G GE C
Sbjct: 165 ILWTLNELSSPYGDTEQKLASYFLQALFNRMTGSGERC 202


>At2g43260.1 68415.m05377 F-box family protein / S locus-related
           weak similarity to S locus F-box (SLF)-S2 protein
           [Antirrhinum hispanicum] GI:13161526; contains TIGRFAM
           TIGR01640: F-box protein interaction domain
          Length = 420

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 EEIPLCESSTL-VDTSDVYETSEPVSVVGRVPASGCASGDIMWL 309
           +E P+ E   L VDT +  + S P  VV     S C +G I WL
Sbjct: 178 QEEPVVECGVLDVDTGEWRKLSPPPYVVNVGSKSVCVNGSIYWL 221


>At4g34890.1 68417.m04948 xanthine dehydrogenase, putative similar
           to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
           [SP|P47990]; contains Pfam profile PF02738 Aldehyde
           oxidase and xanthine dehydrogenase, molybdopterin
           binding domain
          Length = 1361

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 467 MPSLSRFGRFLRSTLKRGGSVDDSAVHSS 381
           +P LSR G+    T+K+G SV  S VH S
Sbjct: 578 VPRLSRIGKQDYETVKQGTSVGSSEVHLS 606


>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 383

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 370 NGEGEECTAES-STLPPRFKVDLKNLPNRLKEGMCRKRSGDQVSAFCYN 513
           N E EE  +ES      R + ++KN  N LK G+C  R  + V   CY+
Sbjct: 300 NKELEELGSESVEAAIVRLQEEVKNCKNILKCGVCFDRPKEVVIVKCYH 348


>At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 484

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 257 TLTGSDVSYTSEVSTNVLLSQRGISSDLM 171
           T+  +D SYT   STNV++   G ++D++
Sbjct: 157 TVVAADASYTKPFSTNVIMLGPGQTTDVL 185


>At1g28320.1 68414.m03475 protease-related similar to Protease degS
           [Precursor] (SP:P44947) [Haemophilus influenzae];
           similar to DegP protease precursor (GI:2565436)
           [Arabidopsis thaliana]
          Length = 709

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 406 TLPPRFKVDLKNLPNRLKEGMCRKRSGDQVSAF 504
           +L P+ +  L NLP  LK+G  ++  G Q + F
Sbjct: 654 SLSPKTEQSLPNLPKLLKDGNNKQTKGSQFAKF 686


>At3g10420.2 68416.m01250 sporulation protein-related similar to
           hypothetical proteins: GB:P51281 [Chloroplast Porphyra
           purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
           [Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
           caldarium]; similar to stage III sporulation protein AA
           (GI:18145497) [Clostridium perfringens str. 13]; similar
           to stage III sporulation protein AA (mutants block
           sporulation after engulfment) (GI:22777578)
           [Oceanobacillus iheyensis]
          Length = 684

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 181 EEIPLCESSTLVDTSDVYETSEPVSVVGRVPASGCASGDIMWLLNEPNQPYEDCE 345
           E +P      LV    + E  E V  +GR P +   SGD  W+++E    ++D E
Sbjct: 102 EILPPATRKELVKHEAIEELIEVVMDLGRKPLARFPSGD--WVISEQPVTHQDLE 154


>At3g10420.1 68416.m01249 sporulation protein-related similar to
           hypothetical proteins: GB:P51281 [Chloroplast Porphyra
           purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
           [Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
           caldarium]; similar to stage III sporulation protein AA
           (GI:18145497) [Clostridium perfringens str. 13]; similar
           to stage III sporulation protein AA (mutants block
           sporulation after engulfment) (GI:22777578)
           [Oceanobacillus iheyensis]
          Length = 547

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 181 EEIPLCESSTLVDTSDVYETSEPVSVVGRVPASGCASGDIMWLLNEPNQPYEDCE 345
           E +P      LV    + E  E V  +GR P +   SGD  W+++E    ++D E
Sbjct: 102 EILPPATRKELVKHEAIEELIEVVMDLGRKPLARFPSGD--WVISEQPVTHQDLE 154


>At1g51830.1 68414.m05843 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase GI:1321686 from [Arabidopsis thaliana]
          Length = 675

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 214 VDTSDVYETSEPVSVVGRVPASGCASGDIMWLLNEPNQPY 333
           V+ S +YE  + V      P +  A+ +I W +  P  P+
Sbjct: 38  VNISTIYELPQSVMSTAATPLNANATLNITWTIEPPTTPF 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,786,186
Number of Sequences: 28952
Number of extensions: 214089
Number of successful extensions: 649
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)