Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120960.seq
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    54   2e-08
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   6.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 34/66 (51%)
 Frame = +2

Query: 311 ENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSF 490
           E G G G TVYPPLSS  +H G ++DLAI SL L GISS                   S 
Sbjct: 126 EEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSL 185

Query: 491 DQLPLF 508
            Q+PLF
Sbjct: 186 YQMPLF 191



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 195 N*LVPLILGAPDIAFPRINN*DFDSYPPPL 284
           N LVPL++GAPD+A+PR+NN  F   PP L
Sbjct: 87  NYLVPLMIGAPDVAYPRVNNFTFWLLPPAL 116



 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 73  ELGNPGS--LIGDDQIYNTIVTAH 138
           EL  PGS  L G+ Q+YN  ++AH
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAH 68


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 265 TPTPLPYIINFKKNCRKWCRNRMNS 339
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,883
Number of Sequences: 5004
Number of extensions: 29280
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)