Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120959.seq
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6908| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)                  30   1.3  
SB_27951| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_6908| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)
          Length = 331

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 255 ICFNLGILFFLCLTSLGVYIVIIAGWS 335
           +C ++  +FFLC  S G+Y V IA  S
Sbjct: 240 MCLSVTAVFFLCYISYGIYFVFIAASS 266


>SB_27951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 255 ICFNLGILFFLCLTSLGVYIVIIAGWS 335
           +C ++  +FFLC    G+Y V IA  S
Sbjct: 240 MCLSVTAVFFLCYIPYGIYFVFIAASS 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,104,962
Number of Sequences: 59808
Number of extensions: 125146
Number of successful extensions: 218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)