Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120959.seq
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.46 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.46 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   3.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 228 KFNSLYI*FICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALL 359
           K   L+I  +CF   ++   C+T  G+Y+  +    + S + LL
Sbjct: 413 KRKELFIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLL 456


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 228 KFNSLYI*FICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALL 359
           K   L+I  +CF   ++   C+T  G+Y+  +    + S + LL
Sbjct: 466 KRKELFIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLL 509


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 331 QPAIITI*TPKLVKHKKNKIPKLKQ 257
           +P I+   T K ++H+ ++  KLK+
Sbjct: 8   RPTIVKKRTKKFIRHQSDRYSKLKR 32


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 312 IVIIAGWSSNSNYALLGGLRSVAQTIS 392
           ++ +  W+S  N  +   L +V QTIS
Sbjct: 16  MIHLIAWASLENTGISDRLENVTQTIS 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,792
Number of Sequences: 438
Number of extensions: 1518
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)