Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120958.seq
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    27   1.7  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   3.9  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    26   3.9  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.2  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   5.2  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    26   5.2  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   6.8  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    25   6.8  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   6.8  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   6.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.0  

>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 378 NLPAESYNSCVNDLTDMYLYKEQNETITNF 467
           N+P +S+ S VN L + Y  KE  +  T+F
Sbjct: 670 NMPVKSFFSTVNQLEETYEKKELKDISTSF 699


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 306 KDIF--TNKFDYKIKRRLNHLKRLFANLPAESYNSCVNDLTDMYLYK 440
           K+IF   ++ D  +K+    +KR  ++L +E+Y+S + ++  + L K
Sbjct: 28  KNIFHTESQLDSSLKKNTAFMKRCKSSLTSENYDSFIKEIKTLSLKK 74


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 306 SASTLTGRSKRVATTTPNVIFVSKKRKIFDAAVRVEGSFHNAH 178
           S+S L         T PN++  S  + IF      +G+FH  H
Sbjct: 17  SSSQLKNSKSLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQH 59


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -3

Query: 287 VVQNALQRRHQT*YSFPRSEKFLMQRSALKGRFIMRTLT-KNTLKDSGAVVILTQLSVYS 111
           + Q+    R  T  +F R + FL         F  + L+ KN ++  G + I   L +YS
Sbjct: 9   IEQSVTNFRETTYEAFSRCKLFLKTLPKTSIFFFDKALSSKNIIEIIGLLCIHVALFIYS 68

Query: 110 STPYALVISICSANLTKSNSSL 45
               + +  I    L+K+ SSL
Sbjct: 69  IVQISELAEIQKVFLSKTQSSL 90


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 336 KIKRRLNHLKRLFANLPAESYNSCVNDLTDMYLYKEQN 449
           KI R +N   ++F  +  E  +SC+  L D Y Y  +N
Sbjct: 510 KIYRLVN--SQVFDEIALELVHSCIRSLVDAYRYFSRN 545


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 408 VNDLTDMYLYKEQNETITNFVKKILDISGP 497
           +N L D  L+   N++  N++  +LD SGP
Sbjct: 204 LNYLKDKILFAPDNQSAWNYLCGVLDKSGP 233


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 213 LHQKFFASWKRISRLVSSLQRVLNDQLMCLLK-DIFTNKFDYKIK-RRLNHLKRLFANLP 386
           +H+   A WK I+ L + +++  NDQ +     ++  +    ++K   L +L++LFA+  
Sbjct: 135 IHELLDAKWKEIAELKTQIEK--NDQALSEKNHEVMVSNQALQMKDTNLTNLEKLFADSR 192

Query: 387 AESYNSC 407
            +    C
Sbjct: 193 EQLETKC 199


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 432 LYKEQNETITNFVKKILDISGPDLGC 509
           LYK Q +   NF+++  DIS  ++ C
Sbjct: 558 LYKFQKDIAFNFLERTSDISAYEIAC 583


>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 363 KRLFANLPAESYNSCVNDLTDMYLYKEQNETITNFVKKI-LDISG 494
           +RL +  PA+ Y +C+ +L D+Y  +   E +   V+K  L +SG
Sbjct: 65  ERLASENPAD-YVACIEELLDIYPMQGGREYLETLVEKYNLHMSG 108


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 457 MVSFCSLYKYMSVRSLTH 404
           +VSF  LY Y SV+ L H
Sbjct: 323 LVSFAHLYSYTSVKCLVH 340


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -2

Query: 273  VATTTPNVIFVSKKRKIFDAAVRVEGSFHNAHVD-----KKHVERQRGCGYFNAV 124
            V+  + N +FVSK+  ++DA  +   S     +D     +K   + R  GYFNA+
Sbjct: 904  VSALSINQLFVSKQSLLYDAHDKNSRSEETDLIDDDEIKQKEEYKNRMRGYFNAI 958


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = +3

Query: 219  QKFFASWKRISRLVSSLQRVLNDQLMCLLK-------DIFTNKFDYKIKRRLNHL 362
            Q+ FA + ++   + SL R   + L+ +++       D+   KFDY +  +LN L
Sbjct: 873  QQIFAFYFKVDYAICSLYRRSENYLIPVVRAFTEFYIDLVVRKFDYLVTSKLNDL 927


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,482
Number of Sequences: 5004
Number of extensions: 53665
Number of successful extensions: 165
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)