Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120958.seq
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0881 + 29055724-29059197 32 0.33
11_06_0091 + 19967390-19969825 32 0.43
07_01_0011 - 81696-81892,83345-83621,83841-84189,84280-84644 29 2.3
02_05_1280 - 35434165-35434392,35434639-35434800,35435241-354353... 29 4.0
09_04_0639 - 19162501-19162878,19162974-19163126,19163366-191640... 28 5.3
08_01_0106 - 762287-763393,763752-764414 28 5.3
03_06_0662 + 35377974-35378270,35378354-35378623,35378795-353789... 28 5.3
03_06_0126 + 31865339-31867943,31868176-31868660 28 7.0
11_04_0436 + 17713591-17714301,17717587-17717820 27 9.3
11_01_0464 + 3597568-3600244,3600345-3600742 27 9.3
10_01_0316 + 3479574-3482679,3482766-3483127 27 9.3
08_01_0153 - 1200121-1200465,1201693-1202920,1204517-1204602,120... 27 9.3
07_03_0970 - 23034521-23034928,23036173-23037081 27 9.3
05_04_0407 - 21040536-21041352,21041452-21042044 27 9.3
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347... 27 9.3
03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825 27 9.3
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 503 GLRKLMRIYLNTDTFSGQLPAYL 571
GLR+L +YL ++FSGQ+PA L
Sbjct: 414 GLRRLREVYLGGNSFSGQIPASL 436
>11_06_0091 + 19967390-19969825
Length = 811
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 503 GLRKLMRIYLNTDTFSGQLPAYLTHYVNYPHQKFVWTKIGSGL 631
G+RK+ + ++ ++FSG P++L + N W K L
Sbjct: 479 GMRKMSILRISNNSFSGNFPSFLQGWTNLSFLDLSWNKFSGSL 521
>07_01_0011 - 81696-81892,83345-83621,83841-84189,84280-84644
Length = 395
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +3
Query: 180 AHYETTLQRGPLHQKFFAS---WKRISR--LVSSLQRVLNDQLMCLLKDIFTNKFDYKIK 344
+H++ +LQ GP K+ S +KR R L+ S + +D CL+ + +K
Sbjct: 102 SHFDRSLQAGPYTLKYRGSMWGYKRFYRRSLLESSDFLKDD---CLVMNCTVGV----VK 154
Query: 345 RRLNHLKRLFANLPAESYNSCVNDLTDM 428
RL K + N+P C N+L ++
Sbjct: 155 NRLETPKNIHINIPPSDMGRCFNNLLNL 182
>02_05_1280 -
35434165-35434392,35434639-35434800,35435241-35435372,
35436048-35436115,35436719-35437313
Length = 394
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 482 KYFFHKIGNGFVLFLVQIHVGEIIDTRIVRFRRQVGKQALEMIES 348
K+F +G GF ++ I GE + RI+ F +Q G +A+ +I +
Sbjct: 200 KWFLGSVGTGFTPHVIIISPGEDVAARIMSFSQQ-GPRAVCIISA 243
>09_04_0639 -
19162501-19162878,19162974-19163126,19163366-19164046,
19164747-19164856,19165050-19165125
Length = 465
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 234 SWKRISRLVSSLQRVLNDQLMCLLKDIF 317
SW+ + RL S + D+L C+L ++F
Sbjct: 207 SWRSLKRLCLSFVHITGDELGCVLSNLF 234
>08_01_0106 - 762287-763393,763752-764414
Length = 589
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 614 WSTQIFGVDSLRNELNRRAVVR*TCRCS--SRCA 519
WS Q+ G+ N +++R + C CS S CA
Sbjct: 520 WSDQVLGISGSPNIVDKRCAIEGLCVCSDDSHCA 553
>03_06_0662 +
35377974-35378270,35378354-35378623,35378795-35378973,
35380073-35380116,35380295-35380384,35380472-35380588,
35380679-35380803,35380883-35381155,35381253-35381386,
35381518-35381604,35381714-35381831
Length = 577
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 201 EGSFHNAHVDKKHVERQRGCGYFNAVVGILVDAVCACY 88
E H +DK+HVE GY V +L D + Y
Sbjct: 263 EAPVHRGGLDKEHVEYLNSLGYPKPPVNVLDDGLILAY 300
>03_06_0126 + 31865339-31867943,31868176-31868660
Length = 1029
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 503 GLRKLMRIYLNTDTFSGQLPAYL 571
GLR LMR+ + + FSG +PA L
Sbjct: 93 GLRGLMRLSVGANAFSGPIPASL 115
>11_04_0436 + 17713591-17714301,17717587-17717820
Length = 314
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 422 GEIIDTRIVRFRRQVGKQALEMIESAFNFIIKLVGENVLQQ 300
GE D R+ R QVG QAL + S +++LV +N +Q
Sbjct: 44 GECHDARLRRMELQVGVQALGLC-SGGEEVLRLVDDNQAEQ 83
>11_01_0464 + 3597568-3600244,3600345-3600742
Length = 1024
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 500 FGLRKLMRIYLNTDTFSGQLPA 565
F L L+ ++L ++ FSGQLPA
Sbjct: 436 FNLTNLVHLFLYSNKFSGQLPA 457
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +2
Query: 509 RKLMRIYLNTDTFSGQLPAYL 571
R L+ +YLN++ F+G +PA++
Sbjct: 335 RCLIMLYLNSNNFTGSIPAFI 355
>08_01_0153 -
1200121-1200465,1201693-1202920,1204517-1204602,
1205145-1205272,1205957-1205969
Length = 599
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 138 NHSPAVFQRVFCQRAHYETTLQRGPLHQKFFASWKRISRLVSS 266
+H P +F+ C + E + L K A+WKR+ + SS
Sbjct: 543 DHDPVLFEE--CLKKFEEDEAKETALRSKREATWKRLEEIASS 583
>07_03_0970 - 23034521-23034928,23036173-23037081
Length = 438
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 261 SSLQRVLNDQLMCLLKDIFTNKFDYKIKRRLNHLKRLFANLPAES--YNSCVNDLTDMYL 434
S+ +++ + + ++ D T K+ IKR + +R + LP++S +NS N L
Sbjct: 355 SAREKIYTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYPALPSKSVEFNSLANGSDLQAL 414
Query: 435 YKEQNE 452
E+ +
Sbjct: 415 LSEEKD 420
>05_04_0407 - 21040536-21041352,21041452-21042044
Length = 469
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 467 KIGNGFVLFLVQIHVGEIIDTRIVRFRRQVG 375
+IG G VL LV + + +++TR +R R G
Sbjct: 304 RIGAGMVLSLVSMVIAALVETRRLRAARDAG 334
>04_04_1094 -
30832987-30833316,30833530-30834273,30834484-30834742,
30834821-30835041,30835127-30835375,30835460-30835595,
30835864-30836207,30836589-30836758,30837080-30837185,
30837267-30837330,30838462-30838616
Length = 925
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -3
Query: 473 FHKIGNGFVLFLVQIHVGEIIDTRIVRFRRQVGKQALEMIESAFNFIIKLVGENVL 306
F + G + +V I E D+R+ FRRQ+ K L+ E + + ++ +L
Sbjct: 618 FVRQGALIAMAMVMIQTNESFDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGIL 673
>03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825
Length = 1023
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 506 LRKLMRIYLNTDTFSGQLPAYLTHYVNYPHQKFVWTKIGSGL 631
+ L + L+ + FSGQ+PA LT N H G L
Sbjct: 99 MTSLQLLDLSNNMFSGQIPAELTKLANLGHLNLSSNGFGGAL 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,783,192
Number of Sequences: 37544
Number of extensions: 325891
Number of successful extensions: 1091
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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