Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120958.seq
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40908| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_46218| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      28   5.4  
SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)          28   5.4  
SB_9725| Best HMM Match : GETHR (HMM E-Value=0.00026)                  28   7.2  
SB_25765| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_20824| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)                27   9.5  
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)                  27   9.5  

>SB_40908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/78 (30%), Positives = 38/78 (48%)
 Frame = +3

Query: 261 SSLQRVLNDQLMCLLKDIFTNKFDYKIKRRLNHLKRLFANLPAESYNSCVNDLTDMYLYK 440
           +SLQ   N++++C + D FT +FD K     N L ++   L  E Y     D +  Y  K
Sbjct: 101 TSLQHA-NNEILCSILDCFTERFD-KSDSVFNALVKV---LDTELYPQAEADKSSTYGLK 155

Query: 441 EQNETITNFVKKILDISG 494
           E    +  F ++IL  +G
Sbjct: 156 ELRLLVKRF-QEILTANG 172


>SB_46218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 644

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -3

Query: 506 TQIRTAY----VKYFFHKIGNGFVLFLVQIHVGEIIDTRIVRFRRQVGKQALEMIESAF 342
           T+ R+A+    +K   HKIG     F V + +GE  DT I +   +V K   +   SA+
Sbjct: 563 TEARSAFLRELIKQELHKIGVRLANFTVMVLIGEANDTGIEKASHRVWKPNYDSYTSAW 621


>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 587

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 121 DNCVKITTAPLSFNVFFVNVRIMKRPFNADRCIKNF 228
           + C K    P+S N     V  ++RP+  D+C K F
Sbjct: 506 NECEKKFKHPVSLNKHVRGVHSLERPYKCDQCDKKF 541


>SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)
          Length = 646

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 141 HSPAVFQRVFCQRAHYETTLQRGPLHQKF 227
           HSP +  +++    HY   +QR P H+ F
Sbjct: 505 HSPRIPPKIYAGFVHYRAFIQRDPSHRWF 533


>SB_9725| Best HMM Match : GETHR (HMM E-Value=0.00026)
          Length = 338

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 440 LVQIHVGEIIDTRIVRFRRQVGKQALEMIESAFNFIIKLVGENVLQQAH 294
           L  +   E+I  R     +  G+ A E+I + +N   KL G N  +  H
Sbjct: 274 LAGLDATEVIHARYNAKTKLAGRNATEVIHARYNAKTKLAGRNATEVIH 322


>SB_25765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 318 TNKFDYKIKRRLN-HLKRLFANLPAESYNSCVNDLTDMYLYKEQNETITNFVKKIL--DI 488
           TNK    +++RL  H ++ +  LP++   SCV D      Y  Q   +  F   ++   +
Sbjct: 198 TNKMGALVQQRLEEHHRKNYPRLPSQQAASCVADGESAGAYVRQLGVLLRFAGDVVVGQL 257

Query: 489 SGP 497
            GP
Sbjct: 258 GGP 260


>SB_20824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 172 VNVRIMKRPFNADRCIKNFSLLG 240
           +   + KRPF  +RC KNFS  G
Sbjct: 440 IRTHMGKRPFYCERCGKNFSQAG 462


>SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)
          Length = 561

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 551 GQLPAYLTHYVNYPHQKFVWTKIGSGL 631
           GQ P  LT+Y  YP   F+ T  G GL
Sbjct: 510 GQYPFPLTYYAEYPSVPFMPTAQGYGL 536


>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
          Length = 925

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 505 PKSGPLMSSIFFTKLVMVSFCSLYKYMSVRSLTHELY 395
           P  G     IF   LV V++CS+  +     +T+ELY
Sbjct: 384 PLLGVSTFGIFSALLVFVNYCSVITFFPTVVITYELY 420


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,038,437
Number of Sequences: 59808
Number of extensions: 414063
Number of successful extensions: 1077
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)