Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120958.seq
(631 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical pr... 29 2.7
U41007-17|AAA82261.1| 507|Caenorhabditis elegans Hypothetical p... 29 2.7
AF016435-4|AAB65880.2| 330|Caenorhabditis elegans Serpentine re... 29 3.6
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 28 6.3
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z92782-3|CAB07189.2| 326|Caenorhabditis elegans Hypothetical pr... 27 8.4
U80453-1|AAK31444.1| 403|Caenorhabditis elegans Hypothetical pr... 27 8.4
U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of ... 27 8.4
U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of ... 27 8.4
U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of ... 27 8.4
U23147-5|AAC46686.2| 308|Caenorhabditis elegans Hypothetical pr... 27 8.4
AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gat... 27 8.4
AF038611-5|AAT27250.1| 760|Caenorhabditis elegans Homolog of el... 27 8.4
AF038611-4|AAB92042.3| 833|Caenorhabditis elegans Homolog of el... 27 8.4
>Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical
protein ZC84.3 protein.
Length = 826
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 351 LNHLKRLFANLPAESYNSCVNDLTDMYLYKEQNETIT 461
L + RLF LPAE N+ V+D+T + Q+ + T
Sbjct: 739 LKMVTRLFEELPAEELNNIVDDITPTIIKAYQSTSST 775
>U41007-17|AAA82261.1| 507|Caenorhabditis elegans Hypothetical
protein C33H5.2 protein.
Length = 507
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +3
Query: 306 KDIFTNKFDYKIKRRLNHLKRLFANLPAESYNS-----CVNDLTDMYLYKEQNETITNFV 470
KDI + D + R +K+LFA LP Y S C N+ Y Y + E IT
Sbjct: 399 KDIKDIEDDLQRMRNKPEIKKLFAELPKIRYYSDLVLKCYNEKFYDYFYSGRYEKITCPG 458
Query: 471 KKILDI-SGPDLGCV 512
+ D PD+ C+
Sbjct: 459 PQYCDFKQHPDITCM 473
>AF016435-4|AAB65880.2| 330|Caenorhabditis elegans Serpentine
receptor, class w protein8 protein.
Length = 330
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -3
Query: 143 VVILTQLSVYSSTPYALVISICSANLTKSNSSLYCVFM 30
+VILT+ + ++ Y ++I IC LT+S +++ FM
Sbjct: 61 MVILTRKELRTNLVYIVMIGICICELTQSFTTILSYFM 98
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 364 SACLPTCRRNRTIRVSMISPTCIC 435
S C TC RN R+ SPT C
Sbjct: 1234 SECALTCHRNHDCRLKRTSPTAYC 1257
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 364 SACLPTCRRNRTIRVSMISPTCIC 435
S C TC RN R+ SPT C
Sbjct: 1234 SECALTCHRNHDCRLKRTSPTAYC 1257
>Z92782-3|CAB07189.2| 326|Caenorhabditis elegans Hypothetical
protein F14F8.4 protein.
Length = 326
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 121 DNCVKITTAPLSFNV 165
DNCV+ TTAP++F++
Sbjct: 311 DNCVRSTTAPVAFSI 325
>U80453-1|AAK31444.1| 403|Caenorhabditis elegans Hypothetical
protein C23H3.5 protein.
Length = 403
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Frame = +3
Query: 201 QRGP-LHQKFFASWKRISRLVS-----SLQRVLNDQL 293
Q GP HQKFF ++++SRLV SL + LN QL
Sbjct: 78 QTGPHRHQKFFGHFRQMSRLVKKYNEMSLIKRLNPQL 114
>U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform c protein.
Length = 442
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +1
Query: 328 LIIKLNADSIISSACLPTCRRNRTIRVSMI----SP-TCICTRNKT 450
L +L DS +S A LP C+RN T+ ++ SP TC+ +T
Sbjct: 82 LFTQLWHDSALSFAHLPACKRNITMETRLLPKIWSPNTCMINSKRT 127
>U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform a protein.
Length = 489
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +1
Query: 328 LIIKLNADSIISSACLPTCRRNRTIRVSMI----SP-TCICTRNKT 450
L +L DS +S A LP C+RN T+ ++ SP TC+ +T
Sbjct: 82 LFTQLWHDSALSFAHLPACKRNITMETRLLPKIWSPNTCMINSKRT 127
>U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform b protein.
Length = 475
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +1
Query: 328 LIIKLNADSIISSACLPTCRRNRTIRVSMI----SP-TCICTRNKT 450
L +L DS +S A LP C+RN T+ ++ SP TC+ +T
Sbjct: 82 LFTQLWHDSALSFAHLPACKRNITMETRLLPKIWSPNTCMINSKRT 127
>U23147-5|AAC46686.2| 308|Caenorhabditis elegans Hypothetical
protein C18H9.1 protein.
Length = 308
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 261 SSLQRVLNDQLMCLLKDIFTNKFD-YKIKRRLNHLKR-LFANLPAESYNSCVNDLTDMYL 434
S L+R LND+ L+ + NKFD ++ L R ++ ++ E ++S V +L +
Sbjct: 28 SVLERFLNDKQKTELRKMVHNKFDGSNAEQVLEESNRYVYGHVTEEQWHSIVPELAEYQA 87
Query: 435 YKEQNETITNFVKKIL 482
K + + K L
Sbjct: 88 KKHECSVYAQLLPKPL 103
>AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gated
chloride channel protein.
Length = 489
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +1
Query: 328 LIIKLNADSIISSACLPTCRRNRTIRVSMI----SP-TCICTRNKT 450
L +L DS +S A LP C+RN T+ ++ SP TC+ +T
Sbjct: 82 LFTQLWHDSALSFAHLPACKRNITMETRLLPKIWSPNTCMINSKRT 127
>AF038611-5|AAT27250.1| 760|Caenorhabditis elegans Homolog of elac2
(cancer susceptibilitylocus) protein 1, isoform b
protein.
Length = 760
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = +1
Query: 4 LHLNRHIKCIKTQYNDEFDLVRFALQIDITSAYGVDEYTDNCVKITTAPLS 156
+++ ++CI+ + ++ ++ Q++ Y ++ Y D +K+T PLS
Sbjct: 109 MNIKHFLECIRPFQDSDYGSCKYPSQVE-ERPYTMENYEDAGLKVTYIPLS 158
>AF038611-4|AAB92042.3| 833|Caenorhabditis elegans Homolog of elac2
(cancer susceptibilitylocus) protein 1, isoform a
protein.
Length = 833
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = +1
Query: 4 LHLNRHIKCIKTQYNDEFDLVRFALQIDITSAYGVDEYTDNCVKITTAPLS 156
+++ ++CI+ + ++ ++ Q++ Y ++ Y D +K+T PLS
Sbjct: 182 MNIKHFLECIRPFQDSDYGSCKYPSQVE-ERPYTMENYEDAGLKVTYIPLS 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,010,594
Number of Sequences: 27780
Number of extensions: 314207
Number of successful extensions: 882
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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