Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120958.seq
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 569  LTHYVNYPHQKFVWTKIGSGL 631
            L  Y NY  Q   +T++G G+
Sbjct: 1180 LRKYTNYTIQVLAFTRVGDGV 1200


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 569  LTHYVNYPHQKFVWTKIGSGL 631
            L  Y NY  Q   +T++G G+
Sbjct: 1176 LRKYTNYTIQVLAFTRVGDGV 1196


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 506 LRKLMRIYLNTDTFSGQLPAY 568
           +  L  +Y   D+F GQL  Y
Sbjct: 513 INMLQNLYEQFDSFCGQLDVY 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,576
Number of Sequences: 438
Number of extensions: 3545
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)