Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120958.seq
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR...    28   5.9  
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi...    28   5.9  
At1g04810.1 68414.m00477 26S proteasome regulatory subunit, puta...    28   5.9  
At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containi...    28   5.9  
At3g25090.1 68416.m03134 F-box family protein-related contains T...    27   7.8  

>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1046

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/86 (23%), Positives = 37/86 (43%)
 Frame = +1

Query: 10  LNRHIKCIKTQYNDEFDLVRFALQIDITSAYGVDEYTDNCVKITTAPLSFNVFFVNVRIM 189
           ++ HI  +   +N EF++V  ++ +     Y    Y +N + +T  P+S     +    +
Sbjct: 715 ISTHINYLDIAHNTEFEVVHASIALWCRLHYLNMSYNENFMGLTHLPMSLTQLILRYSDI 774

Query: 190 KRPFNADRCIKNFSLLGNEYHVWCRR 267
           +R      CIK    L +     CRR
Sbjct: 775 ER---IPDCIKALHQLFSLDLTGCRR 797


>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
           to receptor kinase GI:498278 from [Petunia
           integrifolia]; contains protein kinase domain,
           Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 652

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 503 GLRKLMRIYLNTDTFSGQLPAYLT 574
           GL  L  +YLN + FSG+ P  LT
Sbjct: 107 GLVNLKSLYLNDNNFSGEFPESLT 130


>At1g04810.1 68414.m00477 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
           norvegicus]
          Length = 1001

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -3

Query: 473 FHKIGNGFVLFLVQIHVGEIIDTRIVRFRRQVGKQALEMIESAFNFIIKLVGENVL 306
           F + G    + +V + + E  D+R+  FRRQ+ K  L+  E   + +  ++   +L
Sbjct: 692 FVRQGALIAMAMVMVQISEASDSRVGAFRRQLEKIILDKHEDTMSKMGAILASGIL 747


>At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 660

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 129 AVVGILVDAVCACYINL*CKSNQIK 55
           A +G+++DA C   IN  CK+ +IK
Sbjct: 565 APMGVILDAACEDMINTLCKAGRIK 589


>At3g25090.1 68416.m03134 F-box family protein-related contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 325

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 527 YLNTDTF-SGQLPAYLTHYVNYPHQKFVWTKI 619
           Y+NTD+  S +L  ++ +Y N P ++F W ++
Sbjct: 106 YVNTDSCRSYKLLRFIDYYYNAPEKQFFWYEV 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,705,775
Number of Sequences: 28952
Number of extensions: 270095
Number of successful extensions: 849
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)