Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120957.seq
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 95 5e-21
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 95 5e-21
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 95 5e-21
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 95 5e-21
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 95 5e-21
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 65 5e-12
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 1e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 41 9e-05
SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|c... 30 0.16
SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr... 29 0.28
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 28 0.64
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 27 1.1
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 25 4.5
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 6.0
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 25 7.9
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 25 7.9
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 95.1 bits (226), Expect = 5e-21
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = +1
Query: 256 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 420
T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 22 TIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +2
Query: 194 MQIFIKTLTGKTITAETEPAGRWPISSKKLPIKKVCP 304
MQIF+KTLTGKTIT E E + K+ K+ P
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 95.1 bits (226), Expect = 5e-21
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = +1
Query: 256 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 420
T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 22 TIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +2
Query: 194 MQIFIKTLTGKTITAETEPAGRWPISSKKLPIKKVCP 304
MQIF+KTLTGKTIT E E + K+ K+ P
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 95.1 bits (226), Expect = 5e-21
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = +1
Query: 256 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 420
T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 22 TIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +2
Query: 194 MQIFIKTLTGKTITAETEPAGRWPISSKKLPIKKVCP 304
MQIF+KTLTGKTIT E E + K+ K+ P
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 95.1 bits (226), Expect = 5e-21
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = +1
Query: 256 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 420
T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 22 TIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 95.1 bits (226), Expect = 5e-21
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = +1
Query: 256 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 420
T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 98 TIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 95.1 bits (226), Expect = 5e-21
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = +1
Query: 256 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 420
T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 174 TIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 95.1 bits (226), Expect = 5e-21
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = +1
Query: 256 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 420
T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 250 TIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 95.1 bits (226), Expect = 5e-21
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = +1
Query: 256 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 420
T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 326 TIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +2
Query: 194 MQIFIKTLTGKTITAETEPAGRWPISSKKLPIKKVCP 304
MQIF+KTLTGKTIT E E + K+ K+ P
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +2
Query: 194 MQIFIKTLTGKTITAETEPAGRWPISSKKLPIKKVCP 304
MQIF+KTLTGKTIT E E + K+ K+ P
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 113
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +2
Query: 194 MQIFIKTLTGKTITAETEPAGRWPISSKKLPIKKVCP 304
MQIF+KTLTGKTIT E E + K+ K+ P
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 189
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +2
Query: 194 MQIFIKTLTGKTITAETEPAGRWPISSKKLPIKKVCP 304
MQIF+KTLTGKTIT E E + K+ K+ P
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 265
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +2
Query: 194 MQIFIKTLTGKTITAETEPAGRWPISSKKLPIKKVCP 304
MQIF+KTLTGKTIT E E + K+ K+ P
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 341
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 95.1 bits (226), Expect = 5e-21
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = +1
Query: 256 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 420
T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 22 TIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +2
Query: 194 MQIFIKTLTGKTITAETEPAGRWPISSKKLPIKKVCP 304
MQIF+KTLTGKTIT E E + K+ K+ P
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 65.3 bits (152), Expect = 5e-12
Identities = 27/54 (50%), Positives = 40/54 (74%)
Frame = +1
Query: 259 VADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 420
V+ +K+++ +KEG+P QQRLI+AGKQ+ D K Y+++ S LH+VL LRGG
Sbjct: 23 VSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 44.0 bits (99), Expect = 1e-05
Identities = 16/42 (38%), Positives = 33/42 (78%)
Frame = +1
Query: 259 VADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKE 384
+++LK+KI ++ V++Q+LI++G+ L D KT+ +YNI+++
Sbjct: 24 ISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.1 bits (92), Expect = 9e-05
Identities = 19/52 (36%), Positives = 33/52 (63%)
Frame = +1
Query: 256 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRL 411
+V LK+ IA + ++QRLI+AG+ L+D +++ Y IQ ++H+V L
Sbjct: 25 SVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 129
Score = 30.3 bits (65), Expect = 0.16
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 193 NANIHQNIDGQNHYRRNGTRRTVADLKQKIADKEGVPVDQQRLIF----AGKQLEDSKTM 360
N N+ Q + RR+G V D K I D G+PV+ + L F A KQ DS ++
Sbjct: 12 NMNMTQLMQLGAFDRRSGDDFMVQDFKNGIRDCSGIPVNNRNLAFKAYDAVKQKYDS-SI 70
Query: 361 ADYNIQ 378
+NIQ
Sbjct: 71 KVFNIQ 76
>SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 129
Score = 29.5 bits (63), Expect = 0.28
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 193 NANIHQNIDGQNHYRRNGTRRTVADLKQKIADKEGVPVDQQRLIF----AGKQLEDSKTM 360
N N+ Q + RR+G V D K I D G+PV+ + L F A KQ DS ++
Sbjct: 12 NMNMTQLMQLGAFDRRSGDDFMVQDFKNGIRDCSGIPVNNRNLAFKAYDAVKQKCDS-SI 70
Query: 361 ADYNIQ 378
+NIQ
Sbjct: 71 KVFNIQ 76
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 28.3 bits (60), Expect = 0.64
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 253 RTVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMAD--YNIQKESTLHMVL 405
+TV +LK+ IA P D+ +LI AG+ L + + + ++ T H+V+
Sbjct: 24 KTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILHDATDLVTFHLVI 76
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 27.5 bits (58), Expect = 1.1
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -1
Query: 195 IFTLLLINDNGCCECALASTDGGIVQQAADTXTTNYFPSTAIDFHARNQKLSGRRAR 25
+ LLLI D+G + L +++ + D+ T ++ + IDF R +L G+R +
Sbjct: 9 LIKLLLIGDSGVGKSCL------LLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIK 59
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +1
Query: 259 VADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLR 408
++D +IAD D++++I+A + + + +AD+N H +L+
Sbjct: 536 LSDHNFEIADLRDELQDKEQIIYALRYAQKQRDIADFNQSLAKFPHKILK 585
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.0 bits (52), Expect = 6.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 360 HSFGIFQLFARKDKSLLIYGH 298
H FGIF + D S+ YGH
Sbjct: 260 HVFGIFVQYPAADGSIFDYGH 280
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 24.6 bits (51), Expect = 7.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 232 YRRNGTRRTVADLKQKIADKEGVPVDQQRLIFAGKQLED 348
YR T +T+ LKQ I VD+ +I A +LED
Sbjct: 31 YRNAVTPKTLEFLKQNINPSMLACVDEATMIDAEPELED 69
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 122 TIPPSVEARAHSQQPLSFISNS 187
T+ PS RAHSQ P S + N+
Sbjct: 59 TMRPSALTRAHSQNPNSSLVNN 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,533
Number of Sequences: 5004
Number of extensions: 40382
Number of successful extensions: 116
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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