Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120957.seq
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.56 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   5.2  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 190 KNANIHQNIDGQNHYRRNGTRR 255
           +NAN +QN D QN  ++NG R+
Sbjct: 440 QNAN-NQNADNQNANKQNGNRQ 460


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +1

Query: 193 NANIHQNIDGQNHYRRNGTRRTVADLKQKIADKEGVPVDQQRLIFAG 333
           N  IH N + + +Y  N        L   I   E +PV     I+ G
Sbjct: 87  NRTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPVPVPVPIYCG 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,919
Number of Sequences: 438
Number of extensions: 3059
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)