Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120956.seq
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 29 0.56
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 29 0.56
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 28 0.97
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 28 1.3
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc... 27 1.7
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 1.7
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 27 2.3
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 2.3
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 25 6.9
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 25 9.1
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 29.1 bits (62), Expect = 0.56
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = -1
Query: 508 RKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTFNRLFSSDST 329
R LL +L P T S++ +A + N L C+ K ++L ++LF+ S
Sbjct: 740 RHALLAKLVLFPENTADSLNEVLAA---YKNTLDLCSQDKRKQSSVLKINLSKLFTLHSC 796
Query: 328 DSLLCPKLGDASVKE 284
SL +LG V +
Sbjct: 797 LSLALQRLGYGDVSK 811
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 29.1 bits (62), Expect = 0.56
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 378 RVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLAPYTTMELNRQTRP 551
R+ +++A+ +K + +A L + + K GSN + IF +PY T N+ P
Sbjct: 45 RIGLVQLANTKDKSENLQLAR--LKVLEAAKNGSNVIVLPEIFNSPYGTGYFNQYAEP 100
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 28.3 bits (60), Expect = 0.97
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -1
Query: 544 VWRFNSIVVYGARKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLS 365
VW FNS +V A + PTL P+ + + S+I + +P + + A++S
Sbjct: 241 VWCFNSYLVVSAMSKVRRPTLTIPT-PKKFVRAALSSIGLQRGGTNPYISQPYPSHAVMS 299
Query: 364 FTFNRLFSS 338
++ +L S
Sbjct: 300 WSLEQLLGS 308
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +3
Query: 198 IKTNHVENRVIDRFARTDLLYWTNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNA 377
+ T R+ D RT +LY S+TE S L +S+ V NK LN+ LNN+
Sbjct: 885 VLTRRYLRRLQDSAGRTSILYEKQKNLQASITEVSKQLKSNSKKVTVLRNK-LNI-LNNS 942
>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 486 VGTNSIFLAPYTTMELNRQTRPA 554
VG IFL P +++ RQT PA
Sbjct: 131 VGIGEIFLLPLDVLKIKRQTNPA 153
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 360 VKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLA 512
V+L R NLRI DN+ I + D++V E +N + NSI A
Sbjct: 1755 VQLEEEREKNLRIRQ-DNRHMHAEIGDIRTKFDELVLEKTNLLKENSILQA 1804
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -1
Query: 493 VPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF---NRLFSSDSTDS 323
+P L P +S+I + +W+ +LS + R ++FT + + DS S
Sbjct: 318 LPISLNPDFLISNIHKVSESPRVWVTILSSLSRSCQKFRKKIAFTLFVGKQSKNDDSDFS 377
Query: 322 LLCPKLGDAS 293
LC +L + S
Sbjct: 378 SLCQRLDEIS 387
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +2
Query: 20 SAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 172
S FG+ +C+ + FT S K W N +V ++H +N+
Sbjct: 120 SFFGNISAIFCDDKFPYAYATFTFSDKPSFTSIYRWNVTNSNVTIEHFYNV 170
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 56 QFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 172
Q + A + ++L + P WEND LLK H +
Sbjct: 750 QLMVANLDTYSLDCYEIHEFPSEWENDYAPFLLKEHHKV 788
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 25.4 bits (53), Expect = 6.9
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 285 SLTEASPSLGQSSESVESDENKRLNVKLN--NARVANLRIAHGDNKLSQ 425
SLT+A SL + S+SVE + +L+ +L+ ++AN R G L Q
Sbjct: 16 SLTDAIDSLDKRSDSVEV-KIAKLDAQLSVFQQKIANTRPGPGQTALKQ 63
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 396 IAHGDNKLSQMYIAEKPLSIDDIVKEGSNKV 488
I HG+NK ++ IA I DIV +N V
Sbjct: 274 IVHGNNKNARKNIATLKSKIRDIVNSDANVV 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,803
Number of Sequences: 5004
Number of extensions: 51116
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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