Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120956.seq
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 31 0.76
09_02_0060 + 3729613-3729863,3730377-3730392 30 1.8
05_04_0073 + 17669311-17671635 29 3.1
06_03_0830 + 25159758-25162460 28 5.4
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 28 5.4
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 28 7.1
07_03_0898 - 22403337-22404950 28 7.1
05_05_0351 - 24319356-24319385,24319470-24320902,24321011-243211... 28 7.1
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 28 7.1
04_03_0457 + 16113087-16113249,16113468-16113498,16114138-161142... 27 9.4
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 5 TRVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 172
TR E G+NV+ CE A+ + +S +V + W + L+ L ++ +
Sbjct: 178 TRKCEPEAGANVVKSCESLFAALVGLTAVSLHLVETFLIKWRKEKLTQLTVYVFQM 233
>09_02_0060 + 3729613-3729863,3730377-3730392
Length = 88
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = -2
Query: 393 ANWPPGRY*ALRLIVCSRLIPPIRCSA-----LNWATPRLRNLNLMHSSNRVN 250
A WPP RY + R C R +P + C LN AT R + SS R N
Sbjct: 35 AKWPPSRYRSYR-ATCCRAVPSLLCRVAAVCRLNLATALARCSVVELSSRRFN 86
>05_04_0073 + 17669311-17671635
Length = 774
Score = 29.1 bits (62), Expect = 3.1
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Frame = +3
Query: 291 TEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSI---DD 461
T A P + + V+ +L V+ + + N+ + L +M+ PLS+ D+
Sbjct: 469 THAYPLIVLTPAGVKKMGEVQLAVRFTCSSLLNMMHLYSQPLLPKMHYVH-PLSVMQVDN 527
Query: 462 IVKEGSNKVGTNSIFLAPYTTMELNRQTRPAHLVMWTMTRGTAN-FDIXGI*IPCL 626
+ ++ +N V T P E+ MW+M + AN F I G+ P +
Sbjct: 528 LRRQATNIVSTRLSRAEPPLRKEIVEYMLDVDSHMWSMRKSKANFFRIMGVLSPLI 583
>06_03_0830 + 25159758-25162460
Length = 900
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = +3
Query: 255 LYWTNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYI 434
L W + ++ ASP E S ++R L + V+ A LS +
Sbjct: 552 LGWKGSAATSAFRPASPRCTPDGEKSVSASSQRTGNALFDLNVSESDNATAGEPLSAAIL 611
Query: 435 AEKPLSIDDIVKEGSNKVGTNSIFL 509
PLS D + K+ S VG NS+ L
Sbjct: 612 ---PLSSDIVRKDASATVGLNSLEL 633
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -2
Query: 348 CSRLIPPIRC-SALNWATPRLR 286
CS +PP+RC L W+ PR++
Sbjct: 23 CSSRLPPLRCFVGLRWSAPRIQ 44
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 264 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 443
T N+ L + SP+ S+ +E D KR+ L I +G + + +E+
Sbjct: 154 TGLHNIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEIRLVILNGGSMIYYSNPSEQ 213
Query: 444 PLSID 458
P S+D
Sbjct: 214 PFSVD 218
>07_03_0898 - 22403337-22404950
Length = 537
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -1
Query: 574 MVHITRCAGRVWRFNSIVVYGARKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPC 401
MV T G+ WR N++ V G + V + P+L + ++ + +Y+W +L S C
Sbjct: 193 MVLSTELVGKWWR-NTVSVAGF-VLFSVGFMSLPALAYTLREASWRTMYVWTSLPSLC 248
>05_05_0351 -
24319356-24319385,24319470-24320902,24321011-24321180,
24321302-24321485,24323094-24323264,24324002-24324125
Length = 703
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +3
Query: 300 SPSLGQSSESVESDENKRLNVKLNNARVANLRIA----HGDNKLSQMYIAEKPLSIDDIV 467
SPS Q V+S + ++ LNN + +N+ + H D + + EKPL+ D +
Sbjct: 518 SPSKSQYDPLVDSIDPPKVE-SLNNLKTSNISCSISSQHVDTNVIRGGSLEKPLTFADKL 576
Query: 468 KEGSNKVGTNSIFLAPY 518
+ G+N L Y
Sbjct: 577 ARNVSAKGSNDFGLISY 593
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +3
Query: 273 LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 452
++ + L + LG E + DE RL + + A+ + GDN M+ ++ +
Sbjct: 450 ISKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDTHVR 509
Query: 453 IDDIVKEGS 479
+ D+V++ +
Sbjct: 510 LHDVVRDAA 518
>04_03_0457 +
16113087-16113249,16113468-16113498,16114138-16114271,
16114370-16114518,16114974-16115039,16115159-16115206,
16115293-16115496,16115614-16115637
Length = 272
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/96 (22%), Positives = 44/96 (45%)
Frame = +3
Query: 273 LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 452
+N ++ +AS + G+ +E ESD++ ++NV+ N + G KL ++ K L
Sbjct: 81 VNEDTDDDASMNAGEGNE--ESDDDVKINVRDENGTIE----TRGKTKLKDIWNLPKGLR 134
Query: 453 IDDIVKEGSNKVGTNSIFLAPYTTMELNRQTRPAHL 560
I + + VG + L+ + M + H+
Sbjct: 135 IVVQCNDLNQAVGDEAGILSKFLGMNKGNMNQNDHM 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,262,837
Number of Sequences: 37544
Number of extensions: 316922
Number of successful extensions: 786
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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