Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120956.seq
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)              29   4.1  
SB_51027| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)                  27   9.6  
SB_5821| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +3

Query: 270 ALNLNSLTEASPSLGQSSESVESDENKRLNVKLNN----ARVANLRIAHGDNKLSQMYIA 437
           +L L  L E  P+L ++    +SD+  +  ++L N     R    R+  GD    Q+ +A
Sbjct: 77  SLGLQFLREEYPNLDENLIRFQSDQRGKTLIQLRNLGKGGRCKAGRVQAGDGVSCQLSVA 136

Query: 438 EKPLSIDDIVKEGSNKV 488
           E    ID +++E + +V
Sbjct: 137 E----IDAVIQENTERV 149


>SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1007

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/92 (18%), Positives = 40/92 (43%)
 Frame = +3

Query: 264 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 443
           +++L+ ++L++    L  + +    ++NK   +K+ +    ++R  H    L  +  +EK
Sbjct: 615 SDSLDQSALSQEPQVLSTNVKINNKNKNKLTKLKVLSLNCNSIRSQHKSGLLKALVASEK 674

Query: 444 PLSIDDIVKEGSNKVGTNSIFLAPYTTMELNR 539
           P  I     +    +G   +F   Y     +R
Sbjct: 675 PHIISGCESKLDPSIGNGEVFSNDYEIFRRDR 706


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 312  GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 482
            G  SE++    +K ++   +NA+   L  AHG   LS+  + E  L+  D V  GS+
Sbjct: 833  GIQSENMRKLRSKAVDKATSNAKENALNAAHGAKALSEELLFEITLATVDQVVVGSD 889


>SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)
          Length = 246

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 312 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 482
           G  SE++    +K  +    NA+   L  AHG   LS+  + E  L+  D+V  GS+
Sbjct: 125 GIQSENMRKLRSKAGDKATGNAKENALNAAHGAKALSEALLFEITLATVDLVVVGSD 181


>SB_51027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -1

Query: 610 IPLISKFAVPRVMVHITRCAGRVWRFNSIVVY-GARKMLLVPTLLEPSLTMSSIDSGFSA 434
           IPLI+   + +  V   R   R+ RFN+  V+   +++++  TL    L  +  DS    
Sbjct: 61  IPLINCKDLDKTPVRCQRLLMRLMRFNAKAVHIPGKELVIADTLSRNPLKSNVSDSEDVK 120

Query: 433 IYIWLNLLSPCAMRK 389
            Y W+   S    RK
Sbjct: 121 AYKWMADASKTGSRK 135


>SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)
          Length = 736

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 312 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 482
           G  SE++    +K  +   +NA+   L  AHG   LS+  + E  L+  D V  GS+
Sbjct: 457 GVQSENMRKLRSKAGDKATSNAKENALNTAHGAKALSEALLFEITLATVDQVVVGSD 513


>SB_5821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 240 ARTDLLYWTNALNLNSLTEASPSLGQSSESVESDENKRLNVK 365
           A TDLL  T A+  +S  E +PS+   S   E  +++ L+V+
Sbjct: 458 AYTDLLQRTIAMGDDSTVENTPSVSMQSVGTEDAKSETLSVQ 499


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,993,326
Number of Sequences: 59808
Number of extensions: 373698
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)