Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120956.seq
         (634 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11692-1|CAA77750.1|  858|Homo sapiens human  elongation factor ...    32   1.9  
X51466-1|CAA35829.1|  858|Homo sapiens elongation factor 2 protein.    32   1.9  
BC126259-1|AAI26260.1|  858|Homo sapiens EEF2 protein protein.         32   1.9  
BC006547-1|AAH06547.1|  583|Homo sapiens EEF2 protein protein.         32   1.9  
AY942181-1|AAX34409.1|  858|Homo sapiens elongation factor 2 pro...    32   1.9  
BC146760-1|AAI46761.1| 1393|Homo sapiens RAB3 GTPase activating ...    31   3.4  
AL445435-3|CAI15808.1| 1393|Homo sapiens rab3 GTPase-activating ...    31   3.4  
AL117631-1|CAB56022.1|  464|Homo sapiens hypothetical protein pr...    31   3.4  
AF255648-1|AAG44636.1| 1393|Homo sapiens rGAP-iso protein.             31   3.4  
AF004828-1|AAC35881.1| 1393|Homo sapiens rab3-GAP regulatory dom...    31   3.4  
AB020646-1|BAA74862.2| 1393|Homo sapiens KIAA0839 protein protein.     31   3.4  

>Z11692-1|CAA77750.1|  858|Homo sapiens human  elongation factor 2
           protein.
          Length = 858

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = -1

Query: 340 SDSTDSLLCPK--LGDASVKEFKFNAFVQ*SKSVRAKRSITRFST*FVLIYNFNSNEI*V 167
           S  TDSL+C    +  A   E +F      ++    +R IT  ST   L Y  + N++  
Sbjct: 33  STLTDSLVCKAGIIASARAGETRFTD----TRKDEQERCITIKSTAISLFYELSENDLNF 88

Query: 166 VQMFQKYT*IIVFPIDGHGHNDFTAE 89
           ++  +     ++  ID  GH DF++E
Sbjct: 89  IKQSKDGAGFLINLIDSPGHVDFSSE 114


>X51466-1|CAA35829.1|  858|Homo sapiens elongation factor 2 protein.
          Length = 858

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = -1

Query: 340 SDSTDSLLCPK--LGDASVKEFKFNAFVQ*SKSVRAKRSITRFST*FVLIYNFNSNEI*V 167
           S  TDSL+C    +  A   E +F      ++    +R IT  ST   L Y  + N++  
Sbjct: 33  STLTDSLVCKAGIIASARAGETRFTD----TRKDEQERCITIKSTAISLFYELSENDLNF 88

Query: 166 VQMFQKYT*IIVFPIDGHGHNDFTAE 89
           ++  +     ++  ID  GH DF++E
Sbjct: 89  IKQSKDGAGFLINLIDSPGHVDFSSE 114


>BC126259-1|AAI26260.1|  858|Homo sapiens EEF2 protein protein.
          Length = 858

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = -1

Query: 340 SDSTDSLLCPK--LGDASVKEFKFNAFVQ*SKSVRAKRSITRFST*FVLIYNFNSNEI*V 167
           S  TDSL+C    +  A   E +F      ++    +R IT  ST   L Y  + N++  
Sbjct: 33  STLTDSLVCKAGIIASARAGETRFTD----TRKDEQERCITIKSTAISLFYELSENDLNF 88

Query: 166 VQMFQKYT*IIVFPIDGHGHNDFTAE 89
           ++  +     ++  ID  GH DF++E
Sbjct: 89  IKQSKDGAGFLINLIDSPGHVDFSSE 114


>BC006547-1|AAH06547.1|  583|Homo sapiens EEF2 protein protein.
          Length = 583

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = -1

Query: 340 SDSTDSLLCPK--LGDASVKEFKFNAFVQ*SKSVRAKRSITRFST*FVLIYNFNSNEI*V 167
           S  TDSL+C    +  A   E +F      ++    +R IT  ST   L Y  + N++  
Sbjct: 33  STLTDSLVCKAGIIASARAGETRFTD----TRKDEQERCITIKSTAISLFYELSENDLNF 88

Query: 166 VQMFQKYT*IIVFPIDGHGHNDFTAE 89
           ++  +     ++  ID  GH DF++E
Sbjct: 89  IKQSKDGAGFLINLIDSPGHVDFSSE 114


>AY942181-1|AAX34409.1|  858|Homo sapiens elongation factor 2
           protein.
          Length = 858

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = -1

Query: 340 SDSTDSLLCPK--LGDASVKEFKFNAFVQ*SKSVRAKRSITRFST*FVLIYNFNSNEI*V 167
           S  TDSL+C    +  A   E +F      ++    +R IT  ST   L Y  + N++  
Sbjct: 33  STLTDSLVCKAGIIASARAGETRFTD----TRKDEQERCITIKSTAISLFYELSENDLNF 88

Query: 166 VQMFQKYT*IIVFPIDGHGHNDFTAE 89
           ++  +     ++  ID  GH DF++E
Sbjct: 89  IKQSKDGAGFLINLIDSPGHVDFSSE 114


>BC146760-1|AAI46761.1| 1393|Homo sapiens RAB3 GTPase activating
            protein subunit 2 (non-catalytic) protein.
          Length = 1393

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 551  WPRLAI*LHSRIRCQKNAVSAHFVGALFDYVV 456
            WP LA+ L   ++  ++ V  H+VG L++Y V
Sbjct: 1252 WPALAVDLAHHLQVSEDVVRRHYVGELYNYGV 1283


>AL445435-3|CAI15808.1| 1393|Homo sapiens rab3 GTPase-activating
            protein, non-catalytic subunit (RAB3-GAP150) protein.
          Length = 1393

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 551  WPRLAI*LHSRIRCQKNAVSAHFVGALFDYVV 456
            WP LA+ L   ++  ++ V  H+VG L++Y V
Sbjct: 1252 WPALAVDLAHHLQVSEDVVRRHYVGELYNYGV 1283


>AL117631-1|CAB56022.1|  464|Homo sapiens hypothetical protein
           protein.
          Length = 464

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 551 WPRLAI*LHSRIRCQKNAVSAHFVGALFDYVV 456
           WP LA+ L   ++  ++ V  H+VG L++Y V
Sbjct: 323 WPALAVDLAHHLQVSEDVVRRHYVGELYNYGV 354


>AF255648-1|AAG44636.1| 1393|Homo sapiens rGAP-iso protein.
          Length = 1393

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 551  WPRLAI*LHSRIRCQKNAVSAHFVGALFDYVV 456
            WP LA+ L   ++  ++ V  H+VG L++Y V
Sbjct: 1252 WPALAVDLAHHLQVSEDVVRRHYVGELYNYGV 1283


>AF004828-1|AAC35881.1| 1393|Homo sapiens rab3-GAP regulatory domain
            protein.
          Length = 1393

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 551  WPRLAI*LHSRIRCQKNAVSAHFVGALFDYVV 456
            WP LA+ L   ++  ++ V  H+VG L++Y V
Sbjct: 1252 WPALAVDLAHHLQVSEDVVRRHYVGELYNYGV 1283


>AB020646-1|BAA74862.2| 1393|Homo sapiens KIAA0839 protein protein.
          Length = 1393

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 551  WPRLAI*LHSRIRCQKNAVSAHFVGALFDYVV 456
            WP LA+ L   ++  ++ V  H+VG L++Y V
Sbjct: 1252 WPALAVDLAHHLQVSEDVVRRHYVGELYNYGV 1283


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,527,469
Number of Sequences: 237096
Number of extensions: 1691461
Number of successful extensions: 3452
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3452
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)