Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120956.seq
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    31   0.52 
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      31   0.91 
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    31   0.91 
AC024201-12|AAL27266.1|  544|Caenorhabditis elegans Suppressor o...    31   0.91 
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna...    29   3.7  
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 408 DNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLAPYTTMELNRQTRPAHLVMW 569
           DNK +Q  +AE    + ++  +GS +     I    Y    LN   +P +LVMW
Sbjct: 88  DNKKTQKMLAEYKFKVTELEDDGSKEYVVEKIVAHRYPNDRLN---QPLYLVMW 138


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 429 YIAEKPLSIDDIVKEGSNKVGTNSIFLAPYTTMELNRQTRPAHLVMWTMTRGTANFD 599
           Y+AE P+ I    KEG  K   + + L PY  +   +  +P+ L ++T T   + F+
Sbjct: 218 YVAE-PVLIRLAEKEGKTKADASYLDLLPYIEISFFKHDKPSKLPVFTQTGEWSTFN 273


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 429 YIAEKPLSIDDIVKEGSNKVGTNSIFLAPYTTMELNRQTRPAHLVMWTMTRGTANFD 599
           Y+AE P+ I    KEG  K   + + L PY  +   +  +P+ L ++T T   + F+
Sbjct: 218 YVAE-PVLIRLAEKEGKTKADASYLDLLPYIEISFFKHDKPSKLPVFTQTGEWSTFN 273


>AC024201-12|AAL27266.1|  544|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform b protein.
          Length = 544

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 429 YIAEKPLSIDDIVKEGSNKVGTNSIFLAPYTTMELNRQTRPAHLVMWTMTRGTANFD 599
           Y+AE P+ I    KEG  K   + + L PY  +   +  +P+ L ++T T   + F+
Sbjct: 218 YVAE-PVLIRLAEKEGKTKADASYLDLLPYIEISFFKHDKPSKLPVFTQTGEWSTFN 273


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
 Frame = -1

Query: 601 ISKFAVPRVMVHITRCAGRVWRFNSIVVYGARKMLLVPTLLEPSLTMSSIDSGFSAIYIW 422
           I KF+ P++    T   G V    S +      +LL+  +L   LT+ + DSG       
Sbjct: 323 IKKFSSPQIANFATWTGGIVSGAKSSI--SVSDLLLLFNVLNAKLTLLT-DSGDLT---Q 376

Query: 421 LNLLSPCAMRKLATRALLSFTFNRLFSSDSTDSLLCPKLGDASVKE---FKFNAFV 263
           +N+      +  AT  ++    N +FSS  T  L C KLG+ S ++   F F A V
Sbjct: 377 VNIEEFVEKKLFATNTIV----NTVFSSSITGQLFCLKLGETSEQDSTSFNFAALV 428


>Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical
           protein C47E8.3 protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 526 IVVYGARKMLLVPTLLEPSLTMSSIDSGFSAIYIWLN-LLSPCAMRKLATRALLSFTFNR 350
           + +Y   + L V   +  ++  SS++ GF  +Y +LN ++S   +     R  + F  NR
Sbjct: 272 VSIYLLSQSLQVFLTVWETINRSSLEDGFPTMYSYLNDIVSIFTLLASCLRFPIYFCCNR 331

Query: 349 LFSSDSTDSL 320
           L  + S D+L
Sbjct: 332 LIHTASVDTL 341


>AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9a protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 276 NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVANLRIAHGDNKLSQMY 431
           N N++ E  P+  QSS   E+D++ R  V+ LNN  +A  ++  G   L++ Y
Sbjct: 17  NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIATEKL--GIEGLAKQY 67


>Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +3

Query: 264 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 443
           TNA  LN++T ++ S   SSES  S   +  + K  +   A+ ++ H + + +  Y  + 
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222

Query: 444 PL 449
           P+
Sbjct: 223 PI 224


>Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical
           protein T23B5.3b protein.
          Length = 540

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +3

Query: 264 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 443
           TNA  LN++T ++ S   SSES  S   +  + K  +   A+ ++ H + + +  Y  + 
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222

Query: 444 PL 449
           P+
Sbjct: 223 PI 224


>Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical
           protein M04G12.1b protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 387 NLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLAPY 518
           NL       +L QM  A  P ++DD++++    +G NS  LAP+
Sbjct: 161 NLEQVLTHQRLLQMTQAN-PRAVDDLIQQSLRSLGPNSHLLAPF 203


>Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical
           protein M04G12.1a protein.
          Length = 457

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 387 NLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLAPY 518
           NL       +L QM  A  P ++DD++++    +G NS  LAP+
Sbjct: 188 NLEQVLTHQRLLQMTQAN-PRAVDDLIQQSLRSLGPNSHLLAPF 230


>Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +3

Query: 264 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 443
           TNA  LN++T ++ S   SSES  S   +  + K  +   A+ ++ H + + +  Y  + 
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222

Query: 444 PL 449
           P+
Sbjct: 223 PI 224


>U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna
           synthetase protein2 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 53  EQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 175
           E+F   ++E F    K V     NW+ND   +L + + +++
Sbjct: 131 EEFRAKVYETFVAMEKAVTGEQENWKNDEHMMLWQQIKDIS 171


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical
           protein D2045.2 protein.
          Length = 1792

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = -1

Query: 580 RVMVHITRCAGRVWRFNSIVVYGARKMLLVPTLLEPSLTMSSIDSGFSAIYI 425
           R   HI      +  FN +V       L VP LLE     S+I S FS IY+
Sbjct: 40  RKQEHIQLVTEFLTHFNKVVKSNLAIRLPVPRLLELFQGPSAISSNFSLIYL 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,140,926
Number of Sequences: 27780
Number of extensions: 284629
Number of successful extensions: 854
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)