Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120956.seq
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   1.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   7.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.9  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 297 PRLRNLNLMHSSNRVNQYEQNDQ 229
           P+   +N MH  NRVN+  + D+
Sbjct: 364 PQSNKMNRMHRMNRVNRVNRMDR 386


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query: 279 LNSLTEASPSLGQSSESVESDENK----RLNVKLNNARVANLR 395
           ++SL E       SS SVE  EN+     LN +  + R+ +LR
Sbjct: 326 ISSLDEIRTRYKDSSSSVEGWENRATIPELNEEFRDLRLQDLR 368


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 414 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLAP 515
           K  Q  +  KP +   +V    N  G   IFL P
Sbjct: 487 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGP 520


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 414 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLAP 515
           K  Q  +  KP +   +V    N  G   IFL P
Sbjct: 487 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGP 520


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 414 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLAP 515
           K  Q  +  KP +   +V    N  G   IFL P
Sbjct: 113 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGP 146


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 60  LSRPFSKFLRSAVKSLWPCPSIG 128
           +SRP  K  R A KS  P P  G
Sbjct: 346 MSRPSDKEEREAQKSQKPSPVTG 368


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 86  TLSSKIVVAVPVNWEND 136
           TL+SK  +  PV W ND
Sbjct: 463 TLNSKDPLDPPVIWSND 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,535
Number of Sequences: 438
Number of extensions: 3685
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)