Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120956.seq
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56870.1 68416.m06326 hypothetical protein                          30   1.5  
At5g23890.1 68418.m02806 expressed protein weak similarity to SP...    29   3.4  
At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-lik...    28   4.5  
At5g49470.2 68418.m06121 protein kinase family protein contains ...    28   5.9  
At5g49470.1 68418.m06122 protein kinase family protein contains ...    28   5.9  
At2g36810.1 68415.m04514 expressed protein                             28   5.9  
At5g55630.2 68418.m06937 outward rectifying potassium channel (K...    27   7.8  
At5g55630.1 68418.m06936 outward rectifying potassium channel (K...    27   7.8  

>At3g56870.1 68416.m06326 hypothetical protein 
          Length = 670

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = +3

Query: 246 TDLLYWTNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQ 425
           TD+L  TN  N  SL    P    S+ S E D    L  +L  +  +      GD+KLSQ
Sbjct: 338 TDILQLTNCCN--SLDNLQPVPEDSTSSKEEDH---LTERLQQSLYSKHEDEAGDHKLSQ 392

Query: 426 MY 431
           +Y
Sbjct: 393 LY 394


>At5g23890.1 68418.m02806 expressed protein weak similarity to
           SP|P12957 Caldesmon (CDM) {Gallus gallus}
          Length = 946

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 264 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGD 410
           T    ++SLT    S+ QSS+ + SDE K  N + +N +  +  I   D
Sbjct: 120 TKKQEMHSLTSQQESMIQSSDEISSDEIKVANSEESNLKDEDKSIESND 168


>At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-like
           protein GI:12006424 from [Arabidopsis thaliana];
           contains Pfam profiles PF03731: Ku70/Ku80 N-terminal
           alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel
           domain, PF03730: Ku70/Ku80 C-terminal arm, and PF02037:
           SAP domain; contains TIGRfam profile TIGR00578:
           ATP-dependent DNA helicase ii, 70 kDa subunit
          Length = 621

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 255 LYWTNALNLNS--LTEASPSLGQSSESVESDENKRLNVK 365
           L++ + + LNS  LTE  PS+GQ  E ++    KR+  K
Sbjct: 226 LFYKDLIGLNSDELTEFMPSVGQKLEDMKDQLKKRVLAK 264


>At5g49470.2 68418.m06121 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 834

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 258 YWTNALNLNSLTEASPSLGQSSESV 332
           YW++++N+NS T +S S G +S SV
Sbjct: 448 YWSSSVNVNS-TSSSSSCGSTSSSV 471


>At5g49470.1 68418.m06122 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 483

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 258 YWTNALNLNSLTEASPSLGQSSESV 332
           YW++++N+NS T +S S G +S SV
Sbjct: 161 YWSSSVNVNS-TSSSSSCGSTSSSV 184


>At2g36810.1 68415.m04514 expressed protein 
          Length = 1071

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 156 NICTT*ISLELKL*IKTNHVENRVIDRF 239
           N CTT +S+E KL I+T +   +++D+F
Sbjct: 616 NACTTLVSVEPKLTIETRNRVMKILDQF 643


>At5g55630.2 68418.m06937 outward rectifying potassium channel
           (KCO1) identical to kco1 [Arabidopsis thaliana]
           gi|2230761|emb|CAA69158 of the 2 pore, 4 transmembrane
           (2P/4TM) K+ channel family, PMID:11500563
          Length = 363

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 492 TNSIFLAPYT--TMELNRQTRPAHLVMWTMTRGTANFDI 602
           T+SI LA +     ELN + +   LV W +TR   N D+
Sbjct: 259 TSSICLAQFFLYVAELNTENKQRALVKWVLTRRITNNDL 297


>At5g55630.1 68418.m06936 outward rectifying potassium channel
           (KCO1) identical to kco1 [Arabidopsis thaliana]
           gi|2230761|emb|CAA69158 of the 2 pore, 4 transmembrane
           (2P/4TM) K+ channel family, PMID:11500563
          Length = 363

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 492 TNSIFLAPYT--TMELNRQTRPAHLVMWTMTRGTANFDI 602
           T+SI LA +     ELN + +   LV W +TR   N D+
Sbjct: 259 TSSICLAQFFLYVAELNTENKQRALVKWVLTRRITNNDL 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,960
Number of Sequences: 28952
Number of extensions: 258894
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)