Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120955.seq
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0591 - 30183105-30183869                                         29   3.1  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    29   4.1  
01_07_0264 - 42388455-42388565,42388656-42388688,42388792-423889...    28   5.4  
01_05_0333 + 21064693-21066006                                         27   9.4  

>02_05_0591 - 30183105-30183869
          Length = 254

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 420 SGSG-VGTPQRLSFHHEQVFGRK 485
           SGSG  GTPQ ++F H+  FG K
Sbjct: 232 SGSGGAGTPQTVNFEHQHPFGYK 254


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/82 (24%), Positives = 40/82 (48%)
 Frame = +1

Query: 238  ERAMQRFSTAANGNRLLLPFKNFMIKMGRNTNMKKVNKIASTVLIGFYLRHYLESLPNKA 417
            +++   F+ +   + LL  F+ F + M +  N   +++I         LR  L  +  +A
Sbjct: 2482 QKSTSNFNLSDVDHPLLEKFEAFQVNMPQKKNGSLISQI---------LRSPLSWIEQRA 2532

Query: 418  YPVAELELRNVCRFIMSKYSDE 483
             PV  LELR++C+ +  ++  E
Sbjct: 2533 PPVQMLELRHICKQVEEQHVRE 2554


>01_07_0264 -
           42388455-42388565,42388656-42388688,42388792-42388905,
           42389011-42389100,42389173-42389268,42389363-42389404,
           42389498-42389608,42392258-42392440,42392518-42392961
          Length = 407

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 474 ILAHDETTNVAEFQLRYRIRF 412
           +L+HDE   V E   RYRIRF
Sbjct: 126 LLSHDEMIEVKERHARYRIRF 146


>01_05_0333 + 21064693-21066006
          Length = 437

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 198 PMVAFLHSLTNGTHMSRFV 142
           P++ FLH+L N  H  RFV
Sbjct: 56  PLLGFLHNLDNADHPDRFV 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,927,730
Number of Sequences: 37544
Number of extensions: 298085
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)