Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120955.seq
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)              30   1.4  
SB_44454| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_53890| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   28   7.3  
SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)                    28   7.3  
SB_13659| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00051)          28   7.3  
SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_48395| Best HMM Match : MAM (HMM E-Value=0)                         28   7.3  
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_27190| Best HMM Match : PAN (HMM E-Value=0.13)                      27   9.7  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 27   9.7  

>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
          Length = 490

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 91  ICAIFL*LDLRQSVFFVHKTRHVRAICQRMQKSNHRIAPRGSRARVEYFERAMQRF 258
           +C ++  L + Q V F H  R+   + ++M K  H +A       +E     ++RF
Sbjct: 335 LCNMYGVLSIGQCVVFCHTRRNAAWLAEKMVKEGHAVALLSGEITIEQRIAVLERF 390


>SB_44454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 136 FVHKTRHVRAICQRMQKSNHRI 201
           FVH T HVRA+ QR++    R+
Sbjct: 689 FVHDTFHVRALSQRLRDGQRRV 710


>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 381 FETLFREFAQQSVSGSGVGTPQRLSFHHEQV 473
           FE   +++AQQ   G      QR++ HHE+V
Sbjct: 819 FEKAAQDYAQQKQEGFNARRQQRVTTHHERV 849


>SB_53890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 158 TCRVLCTKNTLCRKSSYRK 102
           TC  LCT+NT CR  ++ K
Sbjct: 54  TCAHLCTRNTECRSINFEK 72


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 193 GCFFAFFDKWHAHVAFCVQRIRFVANQVIEKLHK 92
           G  F      ++HV  C Q+    ANQVIE +H+
Sbjct: 378 GLVFKTTKSRNSHVKKCAQKNNIPANQVIEIMHR 411


>SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)
          Length = 504

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 158 TCRVLCTKNTLCRKSSYRK 102
           TC  LCT+NT CR  ++ K
Sbjct: 40  TCAHLCTRNTECRSINFEK 58


>SB_13659| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00051)
          Length = 1024

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 136  FVHKTRHVRAICQRMQKSNHRIAP 207
            FVH T HVRA+ QR  +   R  P
Sbjct: 984  FVHDTFHVRALSQRRLRDGQRRVP 1007


>SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 406 ANSLNSVSNKSRSIRWTLFC*PFSC*YCGP 317
           A SLN +S K+  + W L C PF C Y  P
Sbjct: 534 AVSLN-MSQKAHPVVWQLSCLPFDCIYVMP 562


>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
          Length = 901

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 421 DTLCWANSLNSVSNKSRSIRWT 356
           D   WA  LN   NK R IRWT
Sbjct: 711 DMCGWAQELNPQQNKFRWIRWT 732


>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 193 GCFFAFFDKWHAHVAFCVQRIRFVANQVIEKLHK 92
           G  F      ++HV  C Q+    ANQVIE +H+
Sbjct: 378 GLVFKTTKSRNSHVKKCAQKNNIPANQVIEIMHR 411


>SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
 Frame = +1

Query: 190 NHRIAPRGSRARVEYFERAMQRFSTAANGNRLLLPFKNFMIKMGRNTNMK-------KVN 348
           N+      ++A   Y  +A++ +ST A  N      KN+  K  +N + K       K  
Sbjct: 234 NYTTENYSTKATENYSTKAIENYSTKATENYSTKAIKNYSTKATKNYSTKATENYSNKAT 293

Query: 349 KIASTVLIGFYLRHYLESLPNKA 417
           K  ST     Y    +E+  NKA
Sbjct: 294 KNYSTKATENYSTKAIENYSNKA 316


>SB_27190| Best HMM Match : PAN (HMM E-Value=0.13)
          Length = 709

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/97 (21%), Positives = 44/97 (45%)
 Frame = +1

Query: 214 SRARVEYFERAMQRFSTAANGNRLLLPFKNFMIKMGRNTNMKKVNKIASTVLIGFYLRHY 393
           S+++ + F R +++    +NG  L +   N  +    +   KKV    S +L  F L+ +
Sbjct: 184 SQSKRKSFSRLLEQVLAESNGQLLFIGDFNLHMDDANDRYAKKV----SNILDAFDLKQH 239

Query: 394 LESLPNKAYPVAELELRNVCRFIMSKYSDENINLLIH 504
           ++ + +K     +L +      I+   SD N  + +H
Sbjct: 240 VKGITHKDGHTLDLVITRSDDDIIKGISDRNPMISVH 276


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 475 NTCS**NDKRCGVPTPLPDTLCWANSLNS 389
           NTC     K C +P P P   C ANS NS
Sbjct: 60  NTCGTTRAKYCELPGPEPCYYCDANSSNS 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,422,570
Number of Sequences: 59808
Number of extensions: 384414
Number of successful extensions: 828
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)