Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120953.seq
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    31   0.14 
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   3.9  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   3.9  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    26   3.9  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   6.8  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    25   6.8  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    25   9.0  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 280 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 390
           ++  +L+C  C ++ EI N  M+P+++L ++ +L L+
Sbjct: 240 LQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 276


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 283 EFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 390
           E +KL+ ++ +SV    +YF++P  R  ++P++  D
Sbjct: 613 ELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILAD 648


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -3

Query: 314 KQMLHCNLTNSIFRRLHLRPFAENNTRRRTCQCADAAAQSSVRICS*YKVVSQK 153
           K+    N T+S   R H RPF    +RRR  + A +    S    S Y+  SQK
Sbjct: 69  KRTFPLNDTHSSRARQHERPFRSRKSRRRKGKKAFSPRPGSPPSPSFYRSGSQK 122


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 280 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSM 417
           +E++K +  +   +AE    F+Q +  +T I    L  C  +L S+
Sbjct: 336 VEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKKPLRFCAERLTSL 381


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +1

Query: 382 ELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESL 480
           +L  CKH     C           CPLCR   +
Sbjct: 781 KLQACKHFFHQACIDQWLTTGNNSCPLCRAHGV 813


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
 Frame = +3

Query: 354 RQIDYNTSIRTRHVQTSIMLNVHTQD*ETKKNTMSPVQG*KFAFQRLQ-----HKPNVVD 518
           +Q+ Y +S         +++ VH  + ++K      +Q  +F  + LQ       PN+VD
Sbjct: 28  KQLSYTSSKVVGSGSFGVVMQVHLIESDSKAAIKRVLQDKRFKNRELQIMRIMKHPNIVD 87

Query: 519 VIKCSVTSVAQWNKINXNFDAXFWASVLFEKSLL 620
           +I    T+    +++  N    F    ++  S L
Sbjct: 88  LIAYYYTTGDNSDEVYLNLVLEFMPETIYRASRL 121


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 354 YWLHKIIFNFCNRKTNVALQFDKLHF*AATPPPFRREQHQAQDLP 220
           YW+++   NF  R T V   F + +F  A P    +   +  D+P
Sbjct: 9   YWVNQFAINFACRNTYVNPMFLR-YFHCAVPRAISQRALKPMDIP 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,181
Number of Sequences: 5004
Number of extensions: 45784
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)