Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120953.seq
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    29   4.0  
12_01_1023 + 10458092-10458397,10459126-10459254,10459335-104595...    27   9.2  
05_03_0536 + 15138052-15138080,15138809-15139004,15139028-15139216     27   9.2  
02_03_0215 + 16505994-16506542,16506803-16507894                       27   9.2  

>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 310 CFSVAEIKNYFMQPIDRLTIIPVLELDTCK 399
           CFS     N++M+PI+ LT++  +++DT +
Sbjct: 237 CFSTEGTANFYMRPIEGLTVL--VDMDTAE 264


>12_01_1023 +
           10458092-10458397,10459126-10459254,10459335-10459553,
           10459649-10459987,10460095-10460199,10460697-10460807,
           10461438-10461688,10462023-10462146,10462440-10462716,
           10463212-10463357,10463449-10463598,10463678-10463910,
           10464246-10464375,10464406-10464510,10464636-10464914
          Length = 967

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 235 LVLFSAKGRRCSRLKMEFVKLQCNICFSVAEIKNYFMQPIDRLT 366
           ++LFS   R C  L M+  K+  N     A I+  F   +D L+
Sbjct: 315 VILFSFSKRECEFLAMQMAKMDLNDDDEKANIETIFWSAMDLLS 358


>05_03_0536 + 15138052-15138080,15138809-15139004,15139028-15139216
          Length = 137

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 48  EGDTRELDRTLSGYEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 188
           E D+ + D     Y +Y    PL L  Q+ +  N F+   + + A+P
Sbjct: 9   ECDSAQFDVLGQSYRQYQLQSPLLLQQQVFSPYNEFVIQQYGTAASP 55


>02_03_0215 + 16505994-16506542,16506803-16507894
          Length = 546

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 422 MHIEHN*CLHVSSSNTGIIVNLSIGCIK*FLISATEKQMLHC 297
           M   H   L VSS+N GI+ NLSI       +  T K +L C
Sbjct: 1   MEENHGFVLEVSSNNEGIVRNLSI-----INVGETNKNVLKC 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,230,993
Number of Sequences: 37544
Number of extensions: 279001
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)